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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150648 (99 seq.)
>W131176087
ARJT01000032
Gammaproteobacteria
Salinimonas chungwhensis DSM 16280 [ARJT]
85162
85086
-
Pro
TGG
[ENA]
¡û
>W131176091
ARJT01000032
Gammaproteobacteria
Salinimonas chungwhensis DSM 16280 [ARJT]
84690
84614
-
Pro
TGG
[ENA]
¡û
>W1711357728
MDHN01000039
Gammaproteobacteria
Alteromonas confluentis [MDHN]
20476
20552
+
Pro
TGG
[ENA]
¡û
>W1711690185
MSEI01000006
Gammaproteobacteria
Idiomarina sp. 5.13 [MSEI]
187889
187965
+
Pro
TGG
[ENA]
¡û
>W1711690189
MSEI01000006
Gammaproteobacteria
Idiomarina sp. 5.13 [MSEI]
188370
188446
+
Pro
TGG
[ENA]
¡û
>W131222489
AUBH01000017
Gammaproteobacteria
Aestuariibacter salexigens DSM 15300 [AUBH]
38575
38651
+
Pro
TGG
[ENA]
¡û
>C015875
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
3782426
3782350
-
Pro
TGG
[Ensembl]
¡û
>WENV180590594
OCOT01088153
[OCOT] marine metagenome; ENVO:00002010
202
126
-
Pro
TGG
[ENA]
¢þ
>WENV181324288
OFLD01009477
[OFLD] marine metagenome; sea ice
169
93
-
Pro
TGG
[ENA]
¢þ
>WENV181324831
OFLH01015250
[OFLH] marine metagenome; sea ice
67
143
+
Pro
TGG
[ENA]
¢þ
>WENV181324835
OFLH01015250
[OFLH] marine metagenome; sea ice
587
662
+
Pro
TGG
[ENA]
¢þ
>W141223717
BAEK01000038
Gammaproteobacteria
Paraglaciecola agarilytica NO2 [BAEK]
238899
238823
-
Pro
TGG
[ENA]
¡û
>W141223763
BAEM01000033
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
327019
327095
+
Pro
TGG
[ENA]
¡û
>W141223815
BAEN01000036
Gammaproteobacteria
Aliiglaciecola lipolytica E3 [BAEN]
69741
69817
+
Pro
TGG
[ENA]
¡û
>W141223869
BAEO01000056
Gammaproteobacteria
Paraglaciecola arctica BSs20135 [BAEO]
105910
105834
-
Pro
TGG
[ENA]
¡û
>W141223873
BAEO01000056
Gammaproteobacteria
Paraglaciecola arctica BSs20135 [BAEO]
105312
105236
-
Pro
TGG
[ENA]
¡û
>W141223910
BAEP01000054
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
102467
102391
-
Pro
TGG
[ENA]
¡û
>W141224009
BAER01000064
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
75066
75142
+
Pro
TGG
[ENA]
¡û
>W141224054
BAES01000040
Gammaproteobacteria
Paraglaciecola psychrophila 170 [BAES]
22117
22193
+
Pro
TGG
[ENA]
¡û
>W141224058
BAES01000040
Gammaproteobacteria
Paraglaciecola psychrophila 170 [BAES]
22702
22778
+
Pro
TGG
[ENA]
¡û
>WENV182540595
OJAK01001347
[OJAK] seawater metagenome; Sea water
28
104
+
Pro
TGG
[ENA]
¢þ
>WENV182540772
OJAP01008641
[OJAP] seawater metagenome; Sea water
599
523
-
Pro
TGG
[ENA]
¢þ
>WENV182542118
OJAV01003524
[OJAV] seawater metagenome; Sea water
2519
2595
+
Pro
TGG
[ENA]
¢þ
>WENV182542377
OJAY01000269
[OJAY] seawater metagenome; Sea water
19715
19639
-
Pro
TGG
[ENA]
¢þ
>WENV182542570
OJAZ01000008
[OJAZ] seawater metagenome; Sea water
2519
2595
+
Pro
TGG
[ENA]
¢þ
>WENV182543540
OJBB01002927
[OJBB] seawater metagenome; Sea water
2519
2595
+
Pro
TGG
[ENA]
¢þ
>WENV182543744
OJBC01001657
[OJBC] seawater metagenome; Sea water
2519
2595
+
Pro
TGG
[ENA]
¢þ
>WENV182544173
OJBE01003539
[OJBE] seawater metagenome; Sea water
1056
980
-
Pro
TGG
[ENA]
¢þ
>WENV182546866
OJBP01010770
[OJBP] seawater metagenome; Sea water
533
609
+
Pro
TGG
[ENA]
¢þ
>WENV182547147
OJBR01002403
[OJBR] seawater metagenome; Sea water
351
275
-
Pro
TGG
[ENA]
¢þ
>WENV182548737
OJBX01000054
[OJBX] seawater metagenome; Sea water
2523
2599
+
Pro
TGG
[ENA]
¢þ
>WENV182550100
OJBZ01003187
[OJBZ] seawater metagenome; Sea water
2521
2597
+
Pro
TGG
[ENA]
¢þ
>WENV182550876
OJCB01001141
[OJCB] seawater metagenome; Sea water
2521
2597
+
Pro
TGG
[ENA]
¢þ
>WENV182551695
OJCG01002860
[OJCG] seawater metagenome; Sea water
64
140
+
Pro
TGG
[ENA]
¢þ
>WENV182552449
OJCK01000146
[OJCK] seawater metagenome; Sea water
130
54
-
Pro
TGG
[ENA]
¢þ
>WENV182556032
OJDF01005187
[OJDF] seawater metagenome; Sea water
60
136
+
Pro
TGG
[ENA]
¢þ
>WENV182556725
OJDH01000011
[OJDH] seawater metagenome; Sea water
62319
62395
+
Pro
TGG
[ENA]
¢þ
>WENV182556946
OJDI01000050
[OJDI] seawater metagenome; Sea water
48746
48822
+
Pro
TGG
[ENA]
¢þ
>WENV182558615
OJDN01000035
[OJDN] seawater metagenome; Sea water
29968
29892
-
Pro
TGG
[ENA]
¢þ
>WENV182562195
OJDZ01000053
[OJDZ] seawater metagenome; Sea water
48778
48854
+
Pro
TGG
[ENA]
¢þ
>WENV182570993
OJFG01000019
[OJFG] seawater metagenome; Sea water
48778
48854
+
Pro
TGG
[ENA]
¢þ
>WENV182572078
OJFL01000263
[OJFL] seawater metagenome; Sea water
15932
16008
+
Pro
TGG
[ENA]
¢þ
>WENV182574293
OJFR01002623
[OJFR] seawater metagenome; Sea water
2520
2596
+
Pro
TGG
[ENA]
¢þ
>WENV182574536
OJFS01000010
[OJFS] seawater metagenome; Sea water
82211
82135
-
Pro
TGG
[ENA]
¢þ
>WENV182575622
OJFV01000582
[OJFV] seawater metagenome; Sea water
373
297
-
Pro
TGG
[ENA]
¢þ
>WENV182575976
OJFX01001033
[OJFX] seawater metagenome; Sea water
7528
7452
-
Pro
TGG
[ENA]
¢þ
>WENV182577775
OJGH01016185
[OJGH] seawater metagenome; Sea water
219
143
-
Pro
TGG
[ENA]
¢þ
>WENV182578418
OJGO01000005
[OJGO] seawater metagenome; Sea water
89341
89417
+
Pro
TGG
[ENA]
¢þ
>WENV182581631
OJGX01023679
[OJGX] seawater metagenome; Sea water
765
841
+
Pro
TGG
[ENA]
¢þ
>WENV182582751
OJHC01000010
[OJHC] seawater metagenome; Sea water
48779
48855
+
Pro
TGG
[ENA]
¢þ
>WENV182585497
OJHH01038195
[OJHH] seawater metagenome; Sea water
252
176
-
Pro
TGG
[ENA]
¢þ
>WENV182585758
OJHI01006166
[OJHI] seawater metagenome; Sea water
924
848
-
Pro
TGG
[ENA]
¢þ
>WENV182589641
OJIE01003431
[OJIE] seawater metagenome; Sea water
503
427
-
Pro
TGG
[ENA]
¢þ
>WENV182591394
OJIO01000018
[OJIO] seawater metagenome; Sea water
2521
2597
+
Pro
TGG
[ENA]
¢þ
>WENV182592389
OJIR01000217
[OJIR] seawater metagenome; Sea water
5367
5291
-
Pro
TGG
[ENA]
¢þ
>WENV183055254
OLGX01000407
[OLGX] seawater metagenome; Sea water
12885
12809
-
Pro
TGG
[ENA]
¢þ
>WENV183057327
OLHL01000385
[OLHL] seawater metagenome; Sea water
19663
19587
-
Pro
TGG
[ENA]
¢þ
>WENV183059767
OLHV01002903
[OLHV] seawater metagenome; Sea water
260
184
-
Pro
TGG
[ENA]
¢þ
>WENV183062236
OLID01000889
[OLID] seawater metagenome; Sea water
2521
2597
+
Pro
TGG
[ENA]
¢þ
>WENV183614647
OODW01009614
[OODW] marine metagenome; sea ice
413
489
+
Pro
TGG
[ENA]
¢þ
>WENV183614975
OOEA01022885
[OOEA] marine metagenome; sea ice
188
264
+
Pro
TGG
[ENA]
¢þ
>WENV183615703
OOEB01099229
[OOEB] marine metagenome; sea ice
171
247
+
Pro
TGG
[ENA]
¢þ
>WENV183616055
OOEC01040984
[OOEC] marine metagenome; sea ice
367
291
-
Pro
TGG
[ENA]
¢þ
>WENV183616785
OOEE01001070
[OOEE] marine metagenome; sea ice
397
321
-
Pro
TGG
[ENA]
¢þ
>WENV183617438
OOEG01000010
[OOEG] marine metagenome; sea ice
16795
16871
+
Pro
TGG
[ENA]
¢þ
>WENV183617471
OOEG01000560
[OOEG] marine metagenome; sea ice
2028
1952
-
Pro
TGG
[ENA]
¢þ
>WENV183621390
OOFU01000103
[OOFU] marine metagenome; sea ice
10933
10857
-
Pro
TGG
[ENA]
¢þ
>WENV183621473
OOFU01002151
[OOFU] marine metagenome; sea ice
213
137
-
Pro
TGG
[ENA]
¢þ
>WENV183622632
OOFW01000513
[OOFW] marine metagenome; sea ice
3105
3181
+
Pro
TGG
[ENA]
¢þ
>WENV183622636
OOFW01000513
[OOFW] marine metagenome; sea ice
3635
3711
+
Pro
TGG
[ENA]
¢þ
>WENV183622772
OOFW01007482
[OOFW] marine metagenome; sea ice
1272
1196
-
Pro
TGG
[ENA]
¢þ
>WENV183623180
OOFX01025457
[OOFX] marine metagenome; sea ice
168
92
-
Pro
TGG
[ENA]
¢þ
>WENV183623486
OOGA01004708
[OOGA] marine metagenome; sea ice
1034
958
-
Pro
TGG
[ENA]
¢þ
>WENV183624417
OOGD01008423
[OOGD] marine metagenome; sea ice
595
671
+
Pro
TGG
[ENA]
¢þ
>WENV183624421
OOGD01008423
[OOGD] marine metagenome; sea ice
1116
1192
+
Pro
TGG
[ENA]
¢þ
>WENV183624574
OOGD01047985
[OOGD] marine metagenome; sea ice
184
260
+
Pro
TGG
[ENA]
¢þ
>WENV183624804
OOGE01011416
[OOGE] marine metagenome; sea ice
811
887
+
Pro
TGG
[ENA]
¢þ
>WENV183628528
OOGO01000684
[OOGO] marine metagenome; sea ice
1913
1989
+
Pro
TGG
[ENA]
¢þ
>WENV183630754
OOGU01001606
[OOGU] marine metagenome; sea ice
2745
2669
-
Pro
TGG
[ENA]
¢þ
>WENV170859459
MDTB01036577
[MDTB] marine metagenome; seawater
124
48
-
Pro
TGG
[ENA]
¢þ
>C191073134
CP031010
Gammaproteobacteria
Alteromonas sp. RKMC-009 [CP031010]
3232051
3231975
-
Pro
TGG
-
¡û
>C191073137
CP031010
Gammaproteobacteria
Alteromonas sp. RKMC-009 [CP031010]
3231627
3231551
-
Pro
TGG
-
¡û
>C191080021
CP031769
Gammaproteobacteria
Salinimonas sediminis N102 [CP031769]
2999877
2999801
-
Pro
TGG
-
¡û
>C191080025
CP031769
Gammaproteobacteria
Salinimonas sediminis N102 [CP031769]
2999391
2999315
-
Pro
TGG
-
¡û
>C191152352
CP036536
Gammaproteobacteria
Salinimonas lutimaris DPSR-4 [CP036536]
1405847
1405923
+
Pro
TGG
-
¡û
>C191152356
CP036536
Gammaproteobacteria
Salinimonas lutimaris DPSR-4 [CP036536]
1406332
1406408
+
Pro
TGG
-
¡û
>C191172219
CP039852
Gammaproteobacteria
Salinimonas iocasae KX18D6 [CP039852]
1291928
1292004
+
Pro
TGG
-
¡û
>C191172223
CP039852
Gammaproteobacteria
Salinimonas iocasae KX18D6 [CP039852]
1292393
1292469
+
Pro
TGG
-
¡û
>W09103801
AAKP01000067
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
522
446
-
Pro
TGG
[ENA]
¡û
>W1910899125
NGFM01000037
Gammaproteobacteria
Alteromonas pelagimontana 5.12 [NGFM]
9931
9855
-
Pro
TGG
[ENA]
¡û
>W1910899129
NGFM01000037
Gammaproteobacteria
Alteromonas pelagimontana 5.12 [NGFM]
9450
9374
-
Pro
TGG
[ENA]
¡û
>W1810157917
PJCF01000002
Gammaproteobacteria
Paraglaciecola sp. MB-3u-78 [PJCF]
408842
408766
-
Pro
TGG
[ENA]
¡û
>W1810157921
PJCF01000002
Gammaproteobacteria
Paraglaciecola sp. MB-3u-78 [PJCF]
408260
408184
-
Pro
TGG
[ENA]
¡û
>W1810426132
PYVY01000002
Gammaproteobacteria
Alteromonas indica IO390401 [PYVY]
223355
223431
+
Pro
TGG
[ENA]
¡û
>W1810426136
PYVY01000002
Gammaproteobacteria
Alteromonas indica IO390401 [PYVY]
223841
223917
+
Pro
TGG
[ENA]
¡û
>C11109447
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
1394333
1394409
+
Pro
TGG
[Ensembl]
¡û
>W1511348335
JRKG01000016
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
583672
583748
+
Pro
TGG
[ENA]
¡û
>C131007684
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
3661169
3661093
-
Pro
TGG
-
¡û
>C131007688
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
3660584
3660508
-
Pro
TGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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