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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150670 (14 seq.)
>C08010700
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
825281
825208
-
Ile
GAT
[Ensembl]
¡û
>C08010702
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
753082
753009
-
Ile
GAT
[Ensembl]
¡û
>C08010705
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
357650
357577
-
Ile
GAT
[Ensembl]
¡û
>W141557064
JHUV01000009
Aquificota
Sulfurihydrogenibium subterraneum DSM 15120 [JHUV]
94062
94135
+
Ile
GAT
[ENA]
¡û
>W09107733
ABLS01000041
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
2877
2950
+
Ile
GAT
[ENA]
¡û
>W09114552
ABZS01000001
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
18833
18906
+
Ile
GAT
[ENA]
¡û
>W09114554
ABZS01000010
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
11801
11874
+
Ile
GAT
[ENA]
¡û
>W09114556
ABZS01000027
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1633
1706
+
Ile
GAT
[ENA]
¡û
>W09114560
ABZS01000050
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1633
1706
+
Ile
GAT
[ENA]
¡û
>W09114572
ABZS01000123
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1633
1706
+
Ile
GAT
[ENA]
¡û
>C09109102
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
828563
828636
+
Ile
GAT
[Ensembl]
¡û
>C09109113
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
1525445
1525372
-
Ile
GAT
[Ensembl]
¡û
>ENV09004179
ADKJ01001085
Hot springs metagenome ctg_1106445192081
123
50
-
Ile
GAT
[ENA]
¡û
>ENV09004233
ADKK01000235
Hot springs metagenome ctg_1106445177583
79860
79933
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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