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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150710 (11 seq.)
>WENV180974258
ODUW01161667
[ODUW] human metagenome; G_DNA_Supragingival plaque
193
119
-
Thr
TGT
[ENA]
¢þ
>W141146920
AWWG01000095
Bacteroidota
Coprobacter fastidiosus NSB1 [AWWG]
114260
114336
+
Thr
TGT
[ENA]
¡û
>WENV182938970
OKVE01006283
[OKVE] human gut metagenome; human gut
2774
2700
-
Thr
TGT
[ENA]
¢þ
>WENV183409019
OMAE01008035
[OMAE] human gut metagenome; feces
1805
1879
+
Thr
TGT
[ENA]
¢þ
>WENV183477481
OMFC01002286
[OMFC] human gut metagenome; feces
1973
2047
+
Thr
TGT
[ENA]
¢þ
>C181000152
AP014609
Bacteroidota
Blattabacterium cuenoti BPAY [AP014609]
473388
473315
-
Thr
TGT
-
¡û
>C191000063
AP014608
Bacteroidota
Blattabacterium cuenoti STAT [AP014608]
473323
473250
-
Thr
TGT
-
¡û
>C141003921
CP005488
Bacteroidota
Blattabacterium sp. [Nauphoeta cinerea] [CP005488]
175535
175610
+
Thr
TGT
[Ensembl]
¡û
>C10101622
CP001487
Bacteroidota
Blattabacterium sp. [Blattella germanica] str. Bge Alboraia [CP001487]
175543
175616
+
Thr
TGT
[Ensembl]
¡û
>C121014248
CP003535
Bacteroidota
Blattabacterium sp. [Blaberus giganteus] BGIGA [CP003535]
470373
470298
-
Thr
TGT
[Ensembl]
¡û
>C131000712
AP012548
Bacteroidota
Blattabacterium cuenoti BPAA [AP012548]
473524
473451
-
Thr
TGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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