This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150718 (19 seq.)
>WENV180414349
OBVC01030544
[OBVC] human gut metagenome; faeces
166
92
-
Ile2
CAT
[ENA]
¢þ
>WENV181465631
OGEQ01000133
[OGEQ] metagenome; Human gut stool
1682
1756
+
Ile2
CAT
[ENA]
¢þ
>WENV181470874
OGEU01023675
[OGEU] metagenome; Human gut stool
1433
1359
-
Ile2
CAT
[ENA]
¢þ
>WENV181537294
OGHW01005195
[OGHW] metagenome; Human gut stool
167
93
-
Ile2
CAT
[ENA]
¢þ
>WENV181934567
OGYT01018978
[OGYT] human gut metagenome; faeces
1274
1348
+
Ile2
CAT
[ENA]
¢þ
>W08006229
ABIX02000002
Actinomycetota
Bifidobacterium dentium ATCC 27678 [ABIX]
152001
151927
-
Met
CAT
[ENA]
¡û
>W141206925
AZMV01000007
Actinomycetota
Bifidobacterium moukalabense DSM 27321 [AZMV]
714443
714517
+
Met
CAT
[ENA]
¡û
>WENV182730359
OJPZ01000055
[OJPZ] human gut metagenome; stool sample
72220
72294
+
Ile2
CAT
[ENA]
¢þ
>WENV183324687
OLVY01039098
[OLVY] human gut metagenome; feces
822
896
+
Ile2
CAT
[ENA]
¢þ
>C191208201
LR134349
Actinomycetota
Bifidobacterium dentium NCTC11816 [LR134349]
697529
697603
+
Met
CAT
-
¡û
>W1910178452
BJEZ01000001
Actinomycetota
Bifidobacterium moukalabense GG01 [BJEZ]
604335
604261
-
Met
CAT
[ENA]
¡û
>W1910178504
BJFA01000001
Actinomycetota
Bifidobacterium moukalabense GB01 [BJFA]
604322
604248
-
Met
CAT
[ENA]
¡û
>W1910178562
BJFB01000001
Actinomycetota
Bifidobacterium moukalabense GB03 [BJFB]
847732
847658
-
Met
CAT
[ENA]
¡û
>W1910178608
BJFC01000001
Actinomycetota
Bifidobacterium moukalabense GB04 [BJFC]
604334
604260
-
Met
CAT
[ENA]
¡û
>C151000372
AP012326
Actinomycetota
Bifidobacterium dentium JCM 1195 = DSM 20436 [AP012326]
697530
697604
+
Met
CAT
[Ensembl]
¡û
>C10101496
CP001750
Actinomycetota
Bifidobacterium dentium Bd1 [CP001750]
697529
697603
+
Met
CAT
[Ensembl]
¡û
>W1610520347
JDUY01000010
Actinomycetota
Bifidobacterium dentium JCM 1195 = DSM 20436 [JDUY]
57298
57224
-
Met
CAT
[ENA]
¡û
>W1710534934
FNSE01000001
Actinomycetota
Bifidobacterium dentium JCM 1195 = DSM 20436 [FNSE]
772832
772758
-
Met
CAT
[ENA]
¡û
>W1710615760
JDUY01000010
Actinomycetota
Bifidobacterium dentium JCM 1195 = DSM 20436 [JDUY]
57298
57224
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK