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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150878 (64 seq.)
>C171002394
CP009471
Thermotogota
Marinitoga sp. 1137 [CP009471]
1002332
1002408
+
Asp
GTC
-
¡û
>w024839
AAZB01000005
Thermotogota
Petrotoga mobilis SJ95 [AAZB]
31018
30945
-
Asp
GTC
[ENA]
¡û
>w024828
AAZB01000002
Thermotogota
Petrotoga mobilis SJ95 [AAZB]
191137
191215
+
Asp
GTC
[ENA]
¡û
>C08007580
CP000879
Thermotogota
Petrotoga mobilis SJ95 [CP000879]
1871869
1871796
-
Asp
GTC
[Ensembl]
¡û
>C08007590
CP000879
Thermotogota
Petrotoga mobilis SJ95 [CP000879]
923982
923909
-
Asp
GTC
[Ensembl]
¡û
>WENV170561767
CZCB01000005
[CZCB] anaerobic digester metagenome; anaerobic digester
1018
942
-
Asp
GTC
[ENA]
¢þ
>WENV170563597
CZCB01022368
[CZCB] anaerobic digester metagenome; anaerobic digester
1030
1106
+
Asp
GTC
[ENA]
¢þ
>WENV170643647
JMBV01000028
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
17956
18032
+
Asp
GTC
[ENA]
¢þ
>WENV170643729
JMBV01000275
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
2880
2804
-
Asp
GTC
[ENA]
¢þ
>WENV170644463
JMBW01017554
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
205
129
-
Asp
GTC
[ENA]
¢þ
>WENV170644765
JMBW01086470
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
258
182
-
Asp
GTC
[ENA]
¢þ
>WENV170644786
JMBW01093823
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
98
174
+
Asp
GTC
[ENA]
¢þ
>WENV170645041
JMBX01001887
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
2221
2297
+
Asp
GTC
[ENA]
¢þ
>WENV170676079
LDZR01000825
[LDZR] terrestrial metagenome; oil reservoir sample K2
14045
14121
+
Asp
GTC
[ENA]
¢þ
>WENV170676089
LDZR01000857
[LDZR] terrestrial metagenome; oil reservoir sample K2
9398
9322
-
Asp
GTC
[ENA]
¢þ
>WENV170677193
LDZT01003629
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1003
1079
+
Asp
GTC
[ENA]
¢þ
>WENV170683840
LFRM01007734
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4363
4439
+
Asp
GTC
[ENA]
¢þ
>WENV170685854
LFRM01112475
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
234
158
-
Asp
GTC
[ENA]
¢þ
>WENV170688683
LFRM01257391
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
314
238
-
Asp
GTC
[ENA]
¢þ
>WENV170716916
LSQX01016619
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8512
8588
+
Asp
GTC
[ENA]
¢þ
>WENV170721462
LSQX01191362
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7363
7439
+
Asp
GTC
[ENA]
¢þ
>WENV170967692
MTKW01002901
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
62901
62977
+
Asp
GTC
[ENA]
¢þ
>WENV170969035
MTKW01019272
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1039
1115
+
Asp
GTC
[ENA]
¢þ
>W1910002785
ATNS01000013
Thermotogota
Petrotoga sp. HWH.PT.55.6.1 [ATNS]
54175
54099
-
Asp
GTC
[ENA]
¡û
>W1910002795
ATNS01000017
Thermotogota
Petrotoga sp. HWH.PT.55.6.1 [ATNS]
55161
55085
-
Asp
GTC
[ENA]
¡û
>W1910006036
AZRI01000029
Thermotogota
Petrotoga sp. 9T1HF07.CasAA.8.2 [AZRI]
46375
46299
-
Asp
GTC
[ENA]
¡û
>W1910006039
AZRI01000036
Thermotogota
Petrotoga sp. 9T1HF07.CasAA.8.2 [AZRI]
131580
131504
-
Asp
GTC
[ENA]
¡û
>W1910006060
AZRJ01000003
Thermotogota
Petrotoga sp. HWHPT.55.6.3 [AZRJ]
38510
38434
-
Asp
GTC
[ENA]
¡û
>W1910006085
AZRJ01000019
Thermotogota
Petrotoga sp. HWHPT.55.6.3 [AZRJ]
54338
54262
-
Asp
GTC
[ENA]
¡û
>W1910006111
AZRK01000002
Thermotogota
Petrotoga sp. 9PWA.NaAc.5.4 [AZRK]
225537
225461
-
Asp
GTC
[ENA]
¡û
>W1910006144
AZRK01000042
Thermotogota
Petrotoga sp. 9PWA.NaAc.5.4 [AZRK]
43565
43489
-
Asp
GTC
[ENA]
¡û
>W1910006162
AZRL01000004
Thermotogota
Petrotoga olearia DSM 13574 [AZRL]
227829
227753
-
Asp
GTC
[ENA]
¡û
>W1910006185
AZRL01000021
Thermotogota
Petrotoga olearia DSM 13574 [AZRL]
72190
72114
-
Asp
GTC
[ENA]
¡û
>W1910006195
AZRM01000003
Thermotogota
Petrotoga miotherma DSM 10691 [AZRM]
27915
27839
-
Asp
GTC
[ENA]
¡û
>W1910006227
AZRM01000031
Thermotogota
Petrotoga miotherma DSM 10691 [AZRM]
32554
32478
-
Asp
GTC
[ENA]
¡û
>W1910006262
AZRN01000021
Thermotogota
Petrotoga mexicana DSM 14811 [AZRN]
78181
78105
-
Asp
GTC
[ENA]
¡û
>W1910006284
AZRN01000036
Thermotogota
Petrotoga mexicana DSM 14811 [AZRN]
63579
63503
-
Asp
GTC
[ENA]
¡û
>W1910563533
JAHC01000016
Thermotogota
Petrotoga sibirica DSM 13575 [JAHC]
53936
53860
-
Asp
GTC
[ENA]
¡û
>W1910563550
JAHC01000032
Thermotogota
Petrotoga sibirica DSM 13575 [JAHC]
131709
131633
-
Asp
GTC
[ENA]
¡û
>W1910563587
JAIP01000012
Thermotogota
Petrotoga sp. SL27 [JAIP]
54036
53960
-
Asp
GTC
[ENA]
¡û
>W1910563596
JAIP01000023
Thermotogota
Petrotoga sp. SL27 [JAIP]
109139
109063
-
Asp
GTC
[ENA]
¡û
>W1910563661
JALY01000127
Thermotogota
Petrotoga halophila DSM 16923 [JALY]
16386
16310
-
Asp
GTC
[ENA]
¡û
>W1910563674
JALY01000222
Thermotogota
Petrotoga halophila DSM 16923 [JALY]
744
668
-
Asp
GTC
[ENA]
¡û
>W1910563676
JALY01000224
Thermotogota
Petrotoga halophila DSM 16923 [JALY]
744
668
-
Asp
GTC
[ENA]
¡û
>W1910568809
JGVM01000023
Thermotogota
Petrotoga sp. HKA.pet.4.5 [JGVM]
43333
43257
-
Asp
GTC
[ENA]
¡û
>W1910568819
JGVM01000036
Thermotogota
Petrotoga sp. HKA.pet.4.5 [JGVM]
184047
183971
-
Asp
GTC
[ENA]
¡û
>W1910568830
JGVT01000001
Thermotogota
Petrotoga sp. Shatin.DS.tank11.9.2.9.3 [JGVT]
185614
185538
-
Asp
GTC
[ENA]
¡û
>W1910568847
JGVT01000004
Thermotogota
Petrotoga sp. Shatin.DS.tank11.9.2.9.3 [JGVT]
68554
68478
-
Asp
GTC
[ENA]
¡û
>C151104208
LN824141
Thermotogota
Defluviitoga tunisiensis [LN824141]
1584904
1584980
+
Asp
GTC
[Ensembl]
¡û
>C151104223
LN824141
Thermotogota
Defluviitoga tunisiensis [LN824141]
885851
885775
-
Asp
GTC
[Ensembl]
¡û
>C121009773
CP003257
Thermotogota
Marinitoga piezophila KA3 [CP003257]
941047
941123
+
Asp
GTC
[Ensembl]
¡û
>W1610032644
AZAX01000011
Thermotogota
Marinitoga sp. 1155 [AZAX]
73612
73688
+
Asp
GTC
[ENA]
¡û
>W1610032688
AZAY01000015
Thermotogota
Marinitoga sp. 1197 [AZAY]
28189
28113
-
Asp
GTC
[ENA]
¡û
>W1610606942
LFTL01000002
Thermotogota
Thermotogaceae bacterium DTU111 [LFTL]
4363
4439
+
Asp
GTC
[ENA]
¡û
>W1610612747
LGFC01000001
Thermotogota
Petrotoga mobilis [LGFC]
14045
14121
+
Asp
GTC
[ENA]
¡û
>W1610612757
LGFC01000033
Thermotogota
Petrotoga mobilis [LGFC]
9398
9322
-
Asp
GTC
[ENA]
¡û
>W1610614063
LGGR01000085
Thermotogota
Petrotoga mobilis [LGGR]
1003
1079
+
Asp
GTC
[ENA]
¡û
>W1710029389
AZAX01000011
Thermotogota
Marinitoga sp. 1155 [AZAX]
73612
73688
+
Asp
GTC
[ENA]
¡û
>W1710029433
AZAY01000015
Thermotogota
Marinitoga sp. 1197 [AZAY]
28189
28113
-
Asp
GTC
[ENA]
¡û
>W1710582861
FQUI01000001
Thermotogota
Marinitoga hydrogenitolerans DSM 16785 [FQUI]
85207
85131
-
Asp
GTC
[ENA]
¡û
>W1710728229
LFTL01000002
Thermotogota
Thermotogaceae bacterium DTU111 [LFTL]
4363
4439
+
Asp
GTC
[ENA]
¡û
>W1710734068
LGFC01000001
Thermotogota
Petrotoga mobilis [LGFC]
14045
14121
+
Asp
GTC
[ENA]
¡û
>W1710734078
LGFC01000033
Thermotogota
Petrotoga mobilis [LGFC]
9398
9322
-
Asp
GTC
[ENA]
¡û
>W1710735146
LGGR01000085
Thermotogota
Petrotoga mobilis [LGGR]
1003
1079
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK