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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151499 (16 seq.)
>W1711573150
MNCN01000110
Verrucomicrobiota
Verrucomicrobia bacterium 13_2_20CM_55_10 [MNCN]
598
523
-
Arg
TCG
[ENA]
¡û
>W1711573187
MNCO01000159
Verrucomicrobiota
Verrucomicrobia bacterium 13_2_20CM_54_12 [MNCO]
33148
33223
+
Arg
TCG
[ENA]
¡û
>W1711573520
MNDI01000006
Verrucomicrobiota
Verrucomicrobia bacterium 13_2_20CM_2_54_15 [MNDI]
2254
2179
-
Arg
TCG
[ENA]
¡û
>W1711575293
MNHY01000048
Verrucomicrobiota
Verrucomicrobia bacterium 13_1_20CM_54_28 [MNHY]
25101
25026
-
Arg
TCG
[ENA]
¡û
>W1711575413
MNIL01000146
Verrucomicrobiota
Verrucomicrobia bacterium 13_1_20CM_4_54_11 [MNIL]
20857
20932
+
Arg
TCG
[ENA]
¡û
>W1711575737
MNJH01000122
Verrucomicrobiota
Verrucomicrobia bacterium 13_1_20CM_3_54_17 [MNJH]
22776
22701
-
Arg
TCG
[ENA]
¡û
>WENV180308422
OBJR01004459
[OBJR] soil metagenome; soil
1125
1049
-
Arg
TCG
[ENA]
¢þ
>WENV180320400
OBKO01002732
[OBKO] soil metagenome; Alaskan Permafrost
240
314
+
Arg
TCG
[ENA]
¢þ
>WENV180327303
OBKT01043241
[OBKT] soil metagenome; soil
45
120
+
Arg
TCG
[ENA]
¢þ
>WENV181165474
OEIS01003480
[OEIS] soil metagenome; soil
544
468
-
Arg
TCG
[ENA]
¢þ
>WENV181184891
OEKV01000624
[OEKV] metagenome; 1998
2049
1976
-
Arg
TCG
[ENA]
¢þ
>WENV181185871
OEMD01000002
[OEMD] metagenome; 1998
1339
1264
-
Arg
TCG
[ENA]
¢þ
>WENV183748711
PPFU01071994
[PPFU] hypolithon metagenome; Antarctic Hypolithon
202
129
-
Arg
TCG
[ENA]
¢þ
>WENV170564484
CZKQ01000021
[CZKQ] soil metagenome genome assembly CiPEHR-AK-2010-FBin.5, contig:; soil
27285
27359
+
Arg
TCG
[ENA]
¢þ
>WENV170990329
MWWA01001099
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
6324
6251
-
Arg
TCG
[ENA]
¢þ
>WENV170990754
MWWA01039762
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
92
19
-
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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