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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151513 (79 seq.)
>W1711043812
LRML01000033
Bacteroidota
Rufibacter roseus [LRML]
2775
2851
+
Ala
TGC
[ENA]
¡û
>W1711043850
LRMM01000126
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
3393
3317
-
Ala
TGC
[ENA]
¡û
>W1711167086
LVWA01000006
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
2050
2126
+
Ala
TGC
[ENA]
¡û
>W1711744020
MUFW01000014
Bacteroidota
Flavobacterium sp. LM4 [MUFW]
2333
2409
+
Ala
TGC
[ENA]
¡û
>PL171000872
CP012645
Bacteroidetes
Rufibacter tibetensis 1351 plasmid:2
10281
10207
-
Ala
TGC
[ENA]
¡û
>W131167822
ARDO01000013
Bacteroidota
Pontibacter roseus DSM 17521 [ARDO]
1940
2016
+
Ala
TGC
[ENA]
¡û
>W131214058
ATTM01000012
Bacteroidota
Flavobacterium antarcticum DSM 19726 [ATTM]
3103
3027
-
Ala
TGC
[ENA]
¡û
>W131237941
AUSH01000072
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
2301
2377
+
Ala
TGC
[ENA]
¡û
>W131237943
AUSH01000074
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
55680
55604
-
Ala
TGC
[ENA]
¡û
>WENV180014151
FPIC01068710
[FPIC] soil metagenome; Soil
1
75
+
Ala
TGC
[ENA]
¢þ
>WENV180257055
OBEQ010876611
[OBEQ] groundwater metagenome; groundwater
366
440
+
Ala
TGC
[ENA]
¢þ
>WENV180291498
OBIV01069033
[OBIV] soil metagenome; Clay
185
109
-
Ala
TGC
[ENA]
¢þ
>WENV180391026
OBPM01001665
[OBPM] marine metagenome; ENVO:00002010
871
945
+
Ala
TGC
[ENA]
¢þ
>WENV180593854
OCOY01000695
[OCOY] marine metagenome; ENVO:00002010
437
363
-
Ala
TGC
[ENA]
¢þ
>WENV181323700
OFKZ01000080
[OFKZ] marine metagenome; sea ice
2223
2297
+
Ala
TGC
[ENA]
¢þ
>WENV181384533
OFRI01002269
[OFRI] wastewater metagenome; Exp Tend VB 90WW
3484
3410
-
Ala
TGC
[ENA]
¢þ
>W141142871
AWRU01000031
Bacteroidota
Pedobacter sp. V48 [AWRU]
174357
174281
-
Ala
TGC
[ENA]
¡û
>W141151932
AXBK01000007
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
208593
208517
-
Ala
TGC
[ENA]
¡û
>W141187617
AYMG01000035
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
3519
3443
-
Ala
TGC
[ENA]
¡û
>WENV182581732
OJGY01000645
[OJGY] seawater metagenome; Sea water
128
54
-
Ala
TGC
[ENA]
¢þ
>WENV182588206
OJHP01000353
[OJHP] seawater metagenome; Sea water
157
83
-
Ala
TGC
[ENA]
¢þ
>WENV183726291
PJQF01149525
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
294
220
-
Ala
TGC
[ENA]
¢þ
>WENV183735157
PJUA01001463
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
3233
3159
-
Ala
TGC
[ENA]
¢þ
>WENV183749841
PPFU01219602
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1010
1084
+
Ala
TGC
[ENA]
¢þ
>WENV170022636
BCQK01028388
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
402
478
+
Ala
TGC
[ENA]
¢þ
>WENV170600514
FUWD010130432
[FUWD] metagenome; unknown
163
237
+
Ala
TGC
[ENA]
¢þ
>WENV170985091
MWVW01020998
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
773
697
-
Ala
TGC
[ENA]
¢þ
>WENV170988747
MWVY01002185
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
572
648
+
Ala
TGC
[ENA]
¢þ
>WENV170989020
MWVY01060106
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
168
244
+
Ala
TGC
[ENA]
¢þ
>WENV170990630
MWWA01023849
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
696
620
-
Ala
TGC
[ENA]
¢þ
>WENV170991584
MWWA01251434
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
238
164
-
Ala
TGC
[ENA]
¢þ
>WENV170994795
MWWE01054924
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
316
392
+
Ala
TGC
[ENA]
¢þ
>C191018682
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
345849
345923
+
Ala
TGC
-
¡û
>C191018685
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
940741
940815
+
Ala
TGC
-
¡û
>C191018694
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
4287907
4287981
+
Ala
TGC
-
¡û
>C191018709
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
3449584
3449510
-
Ala
TGC
-
¡û
>W1911647676
QAJQ01000043
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
3569
3493
-
Ala
TGC
[ENA]
¡û
>W1911747580
QWDM01000035
Bacteroidota
Flavobacterium cupreum CCM 8825 [QWDM]
1987
2061
+
Ala
TGC
[ENA]
¡û
>W1810173102
PJMU01000007
Bacteroidota
Pontibacter ramchanderi LP43 [PJMU]
3520
3444
-
Ala
TGC
[ENA]
¡û
>W1810400071
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
3381526
3381452
-
Ala
TGC
[ENA]
¡û
>W1810400080
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
2178110
2178036
-
Ala
TGC
[ENA]
¡û
>W1810483259
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
440016
440090
+
Ala
TGC
[ENA]
¡û
>W1810483263
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
1832279
1832353
+
Ala
TGC
[ENA]
¡û
>W1810483273
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
4557086
4557012
-
Ala
TGC
[ENA]
¡û
>W1810503727
QBKI01000020
Bacteroidota
Pontibacter mucosus DSM 100162 [QBKI]
1727
1802
+
Ala
TGC
[ENA]
¡û
>W1810533440
QCZK01000083
Bacteroidota
Botryobacter ruber KCTC 52794 [QCZK]
1917
1991
+
Ala
TGC
[ENA]
¡û
>W1810572891
QEKI01000029
Bacteroidota
Pontibacter virosus DSM 100231 [QEKI]
1934
2010
+
Ala
TGC
[ENA]
¡û
>W1810676082
QKLS01000033
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
1962
2036
+
Ala
TGC
[ENA]
¡û
>W1810701254
QMDV01000003
Bacteroidota
Pontibacter arcticus 2b14 [QMDV]
1203
1279
+
Ala
TGC
[ENA]
¡û
>W1810701266
QMDV01000004
Bacteroidota
Pontibacter arcticus 2b14 [QMDV]
1203
1279
+
Ala
TGC
[ENA]
¡û
>W1810701271
QMDV01000005
Bacteroidota
Pontibacter arcticus 2b14 [QMDV]
165370
165294
-
Ala
TGC
[ENA]
¡û
>W1810701274
QMDV01000007
Bacteroidota
Pontibacter arcticus 2b14 [QMDV]
3481
3405
-
Ala
TGC
[ENA]
¡û
>W1810789516
QRGR01000064
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
1847
1921
+
Ala
TGC
[ENA]
¡û
>C151055980
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
1769740
1769816
+
Ala
TGC
[Ensembl]
¡û
>C151055989
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
2568775
2568851
+
Ala
TGC
[Ensembl]
¡û
>C151055992
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
3463093
3463169
+
Ala
TGC
[Ensembl]
¡û
>C151056021
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
995283
995207
-
Ala
TGC
[Ensembl]
¡û
>C151071888
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
4819913
4819987
+
Ala
TGC
[Ensembl]
¡û
>C151071894
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
2693275
2693201
-
Ala
TGC
[Ensembl]
¡û
>SRA1028262
SRR035086.288033
454 Sequencing (SRP001807)
248
322
+
Ala
TGC
[SRA]
>W1511432751
JUGT01000006
Bacteroidota
Chryseobacterium sp. YR561 [JUGT]
2087
2013
-
Ala
TGC
[ENA]
¡û
>C161028442
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
977637
977563
-
Ala
TGC
[Ensembl]
¡û
>C161028444
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
965300
965226
-
Ala
TGC
[Ensembl]
¡û
>C161028447
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
247264
247190
-
Ala
TGC
[Ensembl]
¡û
>C161043244
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
2585147
2585221
+
Ala
TGC
[Ensembl]
¡û
>C161043255
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
3849291
3849365
+
Ala
TGC
[Ensembl]
¡û
>C161043272
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
461704
461630
-
Ala
TGC
[Ensembl]
¡û
>C161070739
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
3416104
3416030
-
Ala
TGC
[Ensembl]
¡û
>C161076977
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
2300018
2300092
+
Ala
TGC
-
¡û
>C161076985
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
3155190
3155264
+
Ala
TGC
-
¡û
>C161077009
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
1434610
1434536
-
Ala
TGC
-
¡û
>W121084793
AKIS01000265
Bacteroidota
Pontibacter sp. BAB1700 [AKIS]
2264
2340
+
Ala
TGC
[ENA]
¡û
>W1610885111
LRML01000033
Bacteroidota
Rufibacter roseus [LRML]
2775
2851
+
Ala
TGC
[ENA]
¡û
>W1610885149
LRMM01000126
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
3393
3317
-
Ala
TGC
[ENA]
¡û
>ENV000118
AC149043
Environmental sample from ENV division of INSDC
17033
17111
+
Ala
TGC
[ENA]
>ENV004045
DQ227614
Environmental sample from ENV division of INSDC
758
836
+
Ala
TGC
[ENA]
>W1710562183
FOOT01000020
Bacteroidota
Pontibacter chinhatensis [FOOT]
3414
3338
-
Ala
TGC
[ENA]
¡û
>W1710597899
FTNM01000009
Bacteroidota
Pontibacter lucknowensis [FTNM]
3637
3561
-
Ala
TGC
[ENA]
¡û
>W1710600040
FTPP01000008
Bacteroidota
Pontibacter indicus [FTPP]
3479
3403
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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