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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151526 (22 seq.)
>WENV180291410
OBIV01053368
[OBIV] soil metagenome; Clay
239
315
+
Arg
TCG
[ENA]
¢þ
>WENV180291643
OBIV01114814
[OBIV] soil metagenome; Clay
368
292
-
Arg
TCG
[ENA]
¢þ
>WENV180327313
OBKT01047584
[OBKT] soil metagenome; soil
117
41
-
Arg
TCG
[ENA]
¢þ
>WENV181123122
OEFO01111448
[OEFO] soil metagenome; soil
116
192
+
Arg
TCG
[ENA]
¢þ
>WENV181163593
OEIQ01112636
[OEIQ] soil metagenome; soil
126
50
-
Arg
TCG
[ENA]
¢þ
>WENV181163865
OEIQ01309311
[OEIQ] soil metagenome; soil
107
31
-
Arg
TCG
[ENA]
¢þ
>WENV181164126
OEIR01026077
[OEIR] soil metagenome; soil
454
530
+
Arg
TCG
[ENA]
¢þ
>WENV181164643
OEIR01276167
[OEIR] soil metagenome; soil
186
110
-
Arg
TCG
[ENA]
¢þ
>WENV181165682
OEIS01097066
[OEIS] soil metagenome; soil
97
21
-
Arg
TCG
[ENA]
¢þ
>WENV170983230
MWVV01013797
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
1101
1025
-
Arg
TCG
[ENA]
¢þ
>WENV170986177
MWVX01019734
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1931
2007
+
Arg
TCG
[ENA]
¢þ
>WENV170986583
MWVX01053559
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1047
971
-
Arg
TCG
[ENA]
¢þ
>WENV170987325
MWVX01169214
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
404
328
-
Arg
TCG
[ENA]
¢þ
>WENV170989057
MWVY01073232
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
261
337
+
Arg
TCG
[ENA]
¢þ
>WENV170990896
MWWA01067626
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
81
157
+
Arg
TCG
[ENA]
¢þ
>WENV170992442
MWWB01030302
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
86
162
+
Arg
TCG
[ENA]
¢þ
>WENV170992753
MWWB01080849
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
708
632
-
Arg
TCG
[ENA]
¢þ
>WENV170993143
MWWB01196872
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
370
446
+
Arg
TCG
[ENA]
¢þ
>WENV170993157
MWWB01199623
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
48
124
+
Arg
TCG
[ENA]
¢þ
>WENV170996079
MWWF01138518
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
263
339
+
Arg
TCG
[ENA]
¢þ
>W1610083316
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
79718
79794
+
Arg
TCG
[ENA]
¡û
>W1710088333
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
79718
79794
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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