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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151687 (46 seq.)
>W131108927
APGP01000029
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
2908
2832
-
Arg
ACG
[ENA]
¡û
>W131218326
ATXO01000019
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
1957
1881
-
Arg
ACG
[ENA]
¡û
>C006906
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
2884554
2884630
+
Arg
ACG
[Ensembl]
¡û
>WENV180373250
OBOI01234527
[OBOI] sediment metagenome; sediment
44
120
+
Arg
ACG
[ENA]
¢þ
>WENV181226054
OFDK01000010
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
103710
103786
+
Arg
ACG
[ENA]
¢þ
>WENV181285426
OFGS01000330
[OFGS] hot springs metagenome; Water and soil
9148
9224
+
Arg
ACG
[ENA]
¢þ
>WENV181408670
OGCH01008091
[OGCH] hot springs metagenome; hot springs
810
886
+
Arg
ACG
[ENA]
¢þ
>WENV170700902
LJSS01006832
[LJSS] hot springs metagenome; water from Lobios Hot Spring
340
416
+
Arg
ACG
[ENA]
¢þ
>C191131132
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
887283
887207
-
Arg
ACG
-
¡û
>W09104536
AALW01000010
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
2467
2543
+
Arg
ACG
[ENA]
¡û
>W09113812
ABYZ01000003
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
330616
330540
-
Arg
ACG
[ENA]
¡û
>C09100833
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
2095448
2095524
+
Arg
ACG
[Ensembl]
¡û
>W1911155336
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
2247038
2247114
+
Arg
ACG
[ENA]
¡û
>W1911244043
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
2222340
2222264
-
Arg
ACG
[ENA]
¡û
>W1911244074
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1801740
1801816
+
Arg
ACG
[ENA]
¡û
>W1911244124
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
2354707
2354783
+
Arg
ACG
[ENA]
¡û
>W1911244201
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
774966
774890
-
Arg
ACG
[ENA]
¡û
>W1911244221
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
2264821
2264897
+
Arg
ACG
[ENA]
¡û
>W1911572564
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
685630
685554
-
Arg
ACG
[ENA]
¡û
>W1911572569
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
139696
139772
+
Arg
ACG
[ENA]
¡û
>W1911572659
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
769842
769766
-
Arg
ACG
[ENA]
¡û
>W1810052278
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
241980
241904
-
Arg
ACG
[ENA]
¡û
>W1810071917
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
723963
723887
-
Arg
ACG
[ENA]
¡û
>W1810071954
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
1758072
1757996
-
Arg
ACG
[ENA]
¡û
>W1810071970
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
63451
63527
+
Arg
ACG
[ENA]
¡û
>W1810368009
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2850735
2850811
+
Arg
ACG
[ENA]
¡û
>C10103649
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
1921482
1921558
+
Arg
ACG
[Ensembl]
¡û
>C11105232
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
839637
839561
-
Arg
ACG
[Ensembl]
¡û
>C11105411
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
782174
782098
-
Arg
ACG
[Ensembl]
¡û
>C11105457
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
855747
855671
-
Arg
ACG
[Ensembl]
¡û
>C11105471
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
1690875
1690951
+
Arg
ACG
[Ensembl]
¡û
>C11105855
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1773366
1773442
+
Arg
ACG
[Ensembl]
¡û
>W11139395
AEKB01000018
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
49053
49129
+
Arg
ACG
[ENA]
¡û
>W11139438
AEKC01000044
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
9057
9133
+
Arg
ACG
[ENA]
¡û
>W11139477
AEKD01000029
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
28957
28881
-
Arg
ACG
[ENA]
¡û
>W1511563953
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
2263943
2264019
+
Arg
ACG
[ENA]
¡û
>W1511564024
LACN01000009
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
109642
109566
-
Arg
ACG
[ENA]
¡û
>W1511564061
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1969961
1970037
+
Arg
ACG
[ENA]
¡û
>W1710603765
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1208283
1208207
-
Arg
ACG
[ENA]
¡û
>W1710603807
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
1248998
1249074
+
Arg
ACG
[ENA]
¡û
>W1710603904
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
2202306
2202382
+
Arg
ACG
[ENA]
¡û
>W1710605065
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
1260954
1261030
+
Arg
ACG
[ENA]
¡û
>W1710609687
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1126926
1126850
-
Arg
ACG
[ENA]
¡û
>W1710609716
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
2775152
2775228
+
Arg
ACG
[ENA]
¡û
>W1710609755
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
2367385
2367461
+
Arg
ACG
[ENA]
¡û
>W1710609801
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
2359929
2360005
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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