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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151689 (47 seq.)
>W131108959
APGP01000073
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
1862
1786
-
Arg
CCT
[ENA]
¡û
>W131218307
ATXO01000011
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
22426
22502
+
Arg
CCT
[ENA]
¡û
>C006927
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
1617941
1617865
-
Arg
CCT
[Ensembl]
¡û
>WENV180014248
FPIC01113305
[FPIC] soil metagenome; Soil
147
223
+
Arg
CCT
[ENA]
¢þ
>W08006053
ABIL02000006
Bacillota
Anaerofustis stercorihominis DSM 17244 [ABIL]
641417
641493
+
Arg
CCT
[ENA]
¡û
>WENV181226071
OFDK01000015
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
7581
7505
-
Arg
CCT
[ENA]
¢þ
>WENV181226142
OFDK01000094
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
37327
37251
-
Arg
CCT
[ENA]
¢þ
>WENV181285351
OFGS01000023
[OFGS] hot springs metagenome; Water and soil
34954
35030
+
Arg
CCT
[ENA]
¢þ
>WENV181411497
OGCI01028159
[OGCI] hot springs metagenome; Hot spring water
1001
1077
+
Arg
CCT
[ENA]
¢þ
>C191131130
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
936519
936443
-
Arg
CCT
-
¡û
>W09113815
ABYZ01000004
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
43301
43377
+
Arg
CCT
[ENA]
¡û
>C09100862
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
971324
971248
-
Arg
CCT
[Ensembl]
¡û
>W1911155367
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1153978
1153902
-
Arg
CCT
[ENA]
¡û
>W1911244059
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
311429
311353
-
Arg
CCT
[ENA]
¡û
>W1911244107
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
700171
700095
-
Arg
CCT
[ENA]
¡û
>W1911244148
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1253132
1253056
-
Arg
CCT
[ENA]
¡û
>W1911244184
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1848878
1848954
+
Arg
CCT
[ENA]
¡û
>W1911244216
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
1256212
1256288
+
Arg
CCT
[ENA]
¡û
>W1911572547
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1788672
1788748
+
Arg
CCT
[ENA]
¡û
>W1911572601
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
1948674
1948598
-
Arg
CCT
[ENA]
¡û
>W1911572642
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1879167
1879243
+
Arg
CCT
[ENA]
¡û
>W1810052252
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
1333218
1333294
+
Arg
CCT
[ENA]
¡û
>W1810071900
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1831525
1831601
+
Arg
CCT
[ENA]
¡û
>W1810071949
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2849201
2849277
+
Arg
CCT
[ENA]
¡û
>W1810072003
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
1874718
1874642
-
Arg
CCT
[ENA]
¡û
>W1810368028
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
1737736
1737660
-
Arg
CCT
[ENA]
¡û
>W1810889470
QUSM01000002
Bacillota
Anaerofustis stercorihominis AM25-6 [QUSM]
100176
100100
-
Arg
CCT
[ENA]
¡û
>C10103665
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
935446
935370
-
Arg
CCT
[Ensembl]
¡û
>C11105217
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1842471
1842547
+
Arg
CCT
[Ensembl]
¡û
>C11105412
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
696113
696037
-
Arg
CCT
[Ensembl]
¡û
>C11105442
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1944553
1944629
+
Arg
CCT
[Ensembl]
¡û
>C11105472
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
1808938
1809014
+
Arg
CCT
[Ensembl]
¡û
>C11105884
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
816611
816535
-
Arg
CCT
[Ensembl]
¡û
>W11139393
AEKB01000017
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
6812
6736
-
Arg
CCT
[ENA]
¡û
>W11139436
AEKC01000035
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
20494
20570
+
Arg
CCT
[ENA]
¡û
>W11139452
AEKD01000003
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
51946
51870
-
Arg
CCT
[ENA]
¡û
>W1511563977
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1179726
1179650
-
Arg
CCT
[ENA]
¡û
>W1511564022
LACN01000009
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
151377
151301
-
Arg
CCT
[ENA]
¡û
>W1511564059
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1933450
1933526
+
Arg
CCT
[ENA]
¡û
>W1710603750
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
2331005
2331081
+
Arg
CCT
[ENA]
¡û
>W1710603848
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
126274
126198
-
Arg
CCT
[ENA]
¡û
>W1710603935
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1073981
1073905
-
Arg
CCT
[ENA]
¡û
>W1710605098
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
138236
138160
-
Arg
CCT
[ENA]
¡û
>W1710609672
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
2249648
2249724
+
Arg
CCT
[ENA]
¡û
>W1710609727
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
1210854
1210778
-
Arg
CCT
[ENA]
¡û
>W1710609779
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1244667
1244591
-
Arg
CCT
[ENA]
¡û
>W1710609825
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1235805
1235729
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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