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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151762 (44 seq.)
>W131052016
AMYG01000073
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
5116
5192
+
Arg
CCT
[ENA]
¡û
>W131167547
ARDJ01000008
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
6028
6104
+
Arg
CCT
[ENA]
¡û
>C025826
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
582044
582120
+
Arg
CCT
[Ensembl]
¡û
>w019001
AATV01000074
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
5711
5787
+
Arg
CCT
[ENA]
¡û
>w010194
AAKQ01000019
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
8139
8215
+
Arg
CCT
[ENA]
¡û
>W141092604
AVAF01000122
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
59492
59568
+
Arg
CCT
[ENA]
¡û
>WENV181226267
OFDK01000462
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
515
439
-
Arg
CCT
[ENA]
¢þ
>W141153126
AXDC01000007
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
45783
45707
-
Arg
CCT
[ENA]
¡û
>C08010935
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
528068
528144
+
Arg
CCT
[Ensembl]
¡û
>C08011066
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
1760842
1760769
-
Arg
CCT
[Ensembl]
¡û
>W141276457
JADV01000001
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
183655
183731
+
Arg
CCT
[ENA]
¡û
>WENV170675657
LDZP01000189
[LDZP] terrestrial metagenome; oil reservoir sample I1
16798
16874
+
Arg
CCT
[ENA]
¢þ
>WENV170676250
LDZR01001871
[LDZR] terrestrial metagenome; oil reservoir sample K2
8085
8009
-
Arg
CCT
[ENA]
¢þ
>WENV170676881
LDZS01002930
[LDZS] terrestrial metagenome; oil reservoir sample K3
1222
1146
-
Arg
CCT
[ENA]
¢þ
>C191108101
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
1116504
1116580
+
Arg
CCT
-
¡û
>W09112126
ABXP01000021
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
6915
6991
+
Arg
CCT
[ENA]
¡û
>W09133545
ACPF01000040
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
15426
15350
-
Arg
CCT
[ENA]
¡û
>W09134115
ACQZ01000003
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
39301
39377
+
Arg
CCT
[ENA]
¡û
>W09135079
ACVH01000076
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
1447
1371
-
Arg
CCT
[ENA]
¡û
>W09135142
ACVK01000003
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
92623
92699
+
Arg
CCT
[ENA]
¡û
>W09135887
ACXP01000037
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
5274
5198
-
Arg
CCT
[ENA]
¡û
>W10105914
ACXY01000003
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
24299
24223
-
Arg
CCT
[ENA]
¡û
>W10120514
ADXD01000085
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
623
547
-
Arg
CCT
[ENA]
¡û
>C10113375
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
610276
610352
+
Arg
CCT
[Ensembl]
¡û
>C10113429
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
653995
654071
+
Arg
CCT
[Ensembl]
¡û
>W11108237
ACXY01000003
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
24299
24223
-
Arg
CCT
[ENA]
¡û
>W1511275116
JOOI01000003
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
212572
212648
+
Arg
CCT
[ENA]
¡û
>C11122493
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
1753054
1752978
-
Arg
CCT
[Ensembl]
¡û
>C11122695
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
567922
567998
+
Arg
CCT
[Ensembl]
¡û
>C11123226
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
686112
686188
+
Arg
CCT
[Ensembl]
¡û
>W11127123
ADXD01000085
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
623
547
-
Arg
CCT
[ENA]
¡û
>W11152673
AEYS01000018
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
50252
50176
-
Arg
CCT
[ENA]
¡û
>W121068111
AJUD01000010
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
5390
5466
+
Arg
CCT
[ENA]
¡û
>W1610043645
BAZY01000003
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
14340
14264
-
Arg
CCT
[ENA]
¡û
>W1610612289
LGEO01000026
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
16798
16874
+
Arg
CCT
[ENA]
¡û
>W1610612652
LGEY01000063
Bacillota
Caldanaerobacter subterraneus [LGEY]
8085
8009
-
Arg
CCT
[ENA]
¡û
>W1610613177
LGFN01000034
Bacillota
Caldanaerobacter subterraneus [LGFN]
1222
1146
-
Arg
CCT
[ENA]
¡û
>W1710040805
BAZY01000003
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
14340
14264
-
Arg
CCT
[ENA]
¡û
>W1710515350
FNBS01000145
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
1736
1812
+
Arg
CCT
[ENA]
¡û
>W1710560404
FONI01000106
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
3739
3815
+
Arg
CCT
[ENA]
¡û
>W1710583277
FQUR01000007
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
206394
206470
+
Arg
CCT
[ENA]
¡û
>W1710733795
LGEO01000026
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
16798
16874
+
Arg
CCT
[ENA]
¡û
>W1710733973
LGEY01000063
Bacillota
Caldanaerobacter subterraneus [LGEY]
8085
8009
-
Arg
CCT
[ENA]
¡û
>W1710734384
LGFN01000034
Bacillota
Caldanaerobacter subterraneus [LGFN]
1222
1146
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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