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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151791 (12 seq.)
>C171033885
CP014859
Actinomycetota
Actinoalloteichus hymeniacidonis HPA177 [CP014859]
2185424
2185348
-
Leu
CAA
-
¡û
>C171045492
CP016076
Actinomycetota
Actinoalloteichus fjordicus ADI127-7 [CP016076]
2362509
2362433
-
Leu
CAA
-
¡û
>C171045539
CP016077
Actinomycetota
Actinoalloteichus sp. GBA129-24 [CP016077]
2368466
2368390
-
Leu
CAA
-
¡û
>WENV170024326
BCQL01043056
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
530
454
-
Leu
CAA
[ENA]
¢þ
>W141758720
JNYU01000915
Actinomycetota
Umezawaea tangerina [JNYU]
2520
2594
+
Leu
CAA
[ENA]
¡û
>W1910179068
BJFL01000011
Actinomycetota
Gandjariella thermophila UICC B-83 SL3-2-4 [BJFL]
141485
141559
+
Leu
CAA
[ENA]
¡û
>W1810364421
PVTF01000004
Actinomycetota
Umezawaea tangerina DSM 44720 [PVTF]
190092
190018
-
Leu
CAA
[ENA]
¡û
>C151105087
LN850107
Actinomycetota
Alloactinosynnema sp. L-07 [LN850107]
1119380
1119306
-
Leu
CAA
-
¡û
>C131019823
HE804045
Actinomycetota
Saccharothrix espanaensis DSM 44229 type strain: DSM 44229 [HE804045]
7509200
7509124
-
Leu
CAA
[Ensembl]
¡û
>W1710513205
FMZZ01000001
Actinomycetota
Actinokineospora iranica iranicum [FMZZ]
502929
503005
+
Leu
CAA
[ENA]
¡û
>W1710518136
FNDV01000002
Actinomycetota
Actinokineospora alba album [FNDV]
499702
499626
-
Leu
CAA
[ENA]
¡û
>W1710524860
FNJB01000005
Actinomycetota
Actinokineospora alba album [FNJB]
446038
445962
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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