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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151815 (11 seq.)
>C171042662
CP015901
Bacillota
Lactococcus cremoris JM3 [CP015901]
534332
534407
+
Ala
TGC
-
¡û
>WENV170001858
AGFT01012201
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
384
311
-
Ala
TGC
[ENA]
¢þ
>C191144967
CP035648
Bacillota
Enterococcus faecium UAMSEF_01 [CP035648]
1011207
1011280
+
Ala
TGC
-
¡û
>C191145035
CP035654
Bacillota
Enterococcus faecium UAMSEF_08 [CP035654]
1011217
1011290
+
Ala
TGC
-
¡û
>W1910568349
JBOV01000084
Bacillota
Streptococcus pneumoniae B1598 [JBOV]
41068
41143
+
Ala
TGC
[ENA]
¡û
>C151055614
CP009612
Bacillota
Streptococcus pyogenes HKU360 [CP009612]
18639
18716
+
Ala
TGC
[Ensembl]
¡û
>C151090120
CP012045
Bacillota
Streptococcus pyogenes HKU488 [CP012045]
24634
24711
+
Ala
TGC
[Ensembl]
¡û
>WENV11101930
AGFT01012201
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
384
311
-
Ala
TGC
[ENA]
¡û
>W121012516
AGOD01000001
Bacillota
Streptococcus pneumoniae GA49138 [AGOD]
1776
1851
+
Ala
TGC
[ENA]
¡û
>W121015298
AGPX01000016
Bacillota
Streptococcus pneumoniae GA47778 [AGPX]
65327
65252
-
Ala
TGC
[ENA]
¡û
>W121106590
ALCK01000001
Bacillota
Streptococcus pneumoniae GA04216 [ALCK]
1997
2072
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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