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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151856 (38 seq.)
>W1711048744
LRPY01000177
Fusobacteriota
Fusobacterium nucleatum [LRPY]
594
670
+
Met
CAT
[ENA]
¡û
>W1711111000
LTWB01000021
Fusobacteriota
Fusobacterium sp. HMSC065F01 [LTWB]
14823
14899
+
Met
CAT
[ENA]
¡û
>WENV180506915
OCAS01036036
[OCAS] human gut metagenome; faeces
11
87
+
fMet
CAT
[ENA]
¢þ
>WENV180721665
ODGL01005245
[ODGL] human metagenome; G_DNA_Subgingival plaque
1310
1234
-
fMet
CAT
[ENA]
¢þ
>WENV180764916
ODIB01005329
[ODIB] human metagenome; G_DNA_Supragingival plaque
121
45
-
fMet
CAT
[ENA]
¢þ
>W141078947
ATKD01000012
Fusobacteriota
Fusobacterium animalis subsp. animalis ChDC F324 [ATKD]
100
24
-
Met
CAT
[ENA]
¡û
>W141078979
ATKE01000034
Fusobacteriota
Fusobacterium hwasookii ChDC F145 [ATKE]
51117
51193
+
Met
CAT
[ENA]
¡û
>WENV180889393
ODMN01038926
[ODMN] human metagenome; G_DNA_Supragingival plaque
104
180
+
fMet
CAT
[ENA]
¢þ
>WENV180975973
ODUY01035656
[ODUY] human metagenome; G_DNA_Supragingival plaque
655
731
+
fMet
CAT
[ENA]
¢þ
>WENV181062820
ODYO01038257
[ODYO] human metagenome; G_DNA_Palatine Tonsils
112
36
-
fMet
CAT
[ENA]
¢þ
>WENV181471470
OGEW01013262
[OGEW] metagenome; Human gut stool
155
79
-
fMet
CAT
[ENA]
¢þ
>WENV181510661
OGGR01001045
[OGGR] metagenome; Human gut stool
155
79
-
fMet
CAT
[ENA]
¢þ
>WENV181559658
OGIZ01013235
[OGIZ] metagenome; Human gut stool
589
665
+
fMet
CAT
[ENA]
¢þ
>W141157927
AXNW01000005
Fusobacteriota
Fusobacterium nucleatum CTI-5 [AXNW]
10157
10081
-
Met
CAT
[ENA]
¡û
>W141157970
AXNX01000003
Fusobacteriota
Fusobacterium nucleatum CTI-3 [AXNX]
10029
9953
-
Met
CAT
[ENA]
¡û
>W141158068
AXNZ01000005
Fusobacteriota
Fusobacterium nucleatum CTI-1 [AXNZ]
9953
9877
-
Met
CAT
[ENA]
¡û
>W141221298
AZYU01000259
Fusobacteriota
Fusobacterium sp. CM21 [AZYU]
711
635
-
Met
CAT
[ENA]
¡û
>W141284890
JANB01000059
Fusobacteriota
Fusobacterium sp. CM1 [JANB]
895
819
-
Met
CAT
[ENA]
¡û
>C181058918
CP022124
Fusobacteriota
Fusobacterium animalis ChDC F332 [CP022124]
409571
409495
-
Met
CAT
-
¡û
>W09118704
ACDF01000050
Fusobacteriota
Fusobacterium animalis 7_1 [ACDF]
89999
90075
+
Met
CAT
[ENA]
¡û
>W09119355
ACDS01000224
Fusobacteriota
Fusobacterium animalis D11 [ACDS]
9995
9919
-
Met
CAT
[ENA]
¡û
>W1910942331
NJGJ01000001
Fusobacteriota
Fusobacterium animalis [NJGJ]
227878
227954
+
Met
CAT
[ENA]
¡û
>W1911160057
NPNC01000022
Fusobacteriota
Fusobacterium animalis subsp. animalis P2_LM [NPNC]
16327
16251
-
Met
CAT
[ENA]
¡û
>W1911160113
NPND01000021
Fusobacteriota
Fusobacterium animalis subsp. animalis P2_CP [NPND]
16249
16173
-
Met
CAT
[ENA]
¡û
>W1911596352
PNHC01000004
Fusobacteriota
Fusobacterium nucleatum UMB0249 [PNHC]
148976
148900
-
Met
CAT
[ENA]
¡û
>C151016809
CP007062
Fusobacteriota
Fusobacterium animalis 7_1 [CP007062]
2197420
2197344
-
Met
CAT
[Ensembl]
¡û
>C151097722
CP012713
Fusobacteriota
Fusobacterium animalis KCOM 1279 [CP012713]
355328
355404
+
Met
CAT
-
¡û
>C151097798
CP012715
Fusobacteriota
Fusobacterium animalis KCOM 1325 [CP012715]
118984
119060
+
Met
CAT
-
¡û
>W10103300
ACQE01000155
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
14194
14270
+
Met
CAT
[ENA]
¡û
>W11103456
ACQE01000155
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
14194
14270
+
Met
CAT
[ENA]
¡û
>W11106140
ACUO01000020
Fusobacteriota
Fusobacterium animalis 11_3_2 [ACUO]
42225
42149
-
Met
CAT
[ENA]
¡û
>W11115185
ADEE01000012
Fusobacteriota
Fusobacterium animalis 21_1A [ADEE]
69349
69425
+
Met
CAT
[ENA]
¡û
>W11171104
AFQD01000095
Fusobacteriota
Fusobacterium animalis subsp. animalis ATCC 51191 [AFQD]
12134
12058
-
Met
CAT
[ENA]
¡û
>W121009374
AGEH01000025
Fusobacteriota
Fusobacterium animalis subsp. animalis F0419 [AGEH]
37377
37453
+
Met
CAT
[ENA]
¡û
>W121076744
AKBT01000001
Fusobacteriota
Fusobacterium animalis 7_1 [AKBT]
2011517
2011441
-
Met
CAT
[ENA]
¡û
>W121077400
AKCE01000001
Fusobacteriota
Fusobacterium animalis subsp. animalis F0419 [AKCE]
391366
391290
-
Met
CAT
[ENA]
¡û
>C131005515
CP003723
Fusobacteriota
Fusobacterium animalis 4_8 [CP003723]
2014132
2014056
-
Met
CAT
[Ensembl]
¡û
>W1610889873
LRPY01000177
Fusobacteriota
Fusobacterium nucleatum [LRPY]
594
670
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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