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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151859 (92 seq.)
>W1710883010
LMVH01000001
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum [LMVH]
260927
261003
+
Arg
TCG
[ENA]
¡û
>W1711048745
LRPY01000294
Fusobacteriota
Fusobacterium nucleatum [LRPY]
6124
6200
+
Arg
TCG
[ENA]
¡û
>W1711095482
LTGW01000071
Fusobacteriota
Fusobacterium sp. HMSC064B12 [LTGW]
22338
22262
-
Arg
TCG
[ENA]
¡û
>W1711111025
LTWB01000082
Fusobacteriota
Fusobacterium sp. HMSC065F01 [LTWB]
39679
39603
-
Arg
TCG
[ENA]
¡û
>W1711525252
MLQO01000017
Fusobacteriota
Fusobacterium nucleatum [MLQO]
5792
5868
+
Arg
TCG
[ENA]
¡û
>W131100353
AOUL01000188
Fusobacteriota
Fusobacterium nucleatum CC53 [AOUL]
72
148
+
Arg
TCG
[ENA]
¡û
>C009448
AE009951
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [AE009951]
1081920
1081996
+
Arg
TCG
[Ensembl]
¡û
>WENV180550271
OCIZ01075322
[OCIZ] human oral metagenome; human oral
94
170
+
Arg
TCG
[ENA]
¢þ
>WENV180718167
ODGF01000450
[ODGF] human metagenome; G_DNA_Throat
79
155
+
Arg
TCG
[ENA]
¢þ
>WENV180721028
ODGK01002351
[ODGK] human metagenome; G_DNA_Palatine Tonsils
1015
1091
+
Arg
TCG
[ENA]
¢þ
>WENV180729113
ODGU01204442
[ODGU] human metagenome; G_DNA_Supragingival plaque
124
200
+
Arg
TCG
[ENA]
¢þ
>WENV180735248
ODGZ01114281
[ODGZ] human metagenome; G_DNA_Supragingival plaque
266
190
-
Arg
TCG
[ENA]
¢þ
>WENV180782149
ODIP01026428
[ODIP] human metagenome; G_DNA_Supragingival plaque
704
628
-
Arg
ACG
[ENA]
¢þ
>WENV180788070
ODIS01028146
[ODIS] human metagenome; G_DNA_Supragingival plaque
1237
1161
-
Arg
TCG
[ENA]
¢þ
>W141078899
ATKB01000138
Fusobacteriota
Fusobacterium vincentii subsp. vincentii ChDC F8 [ATKB]
6125
6049
-
Arg
TCG
[ENA]
¡û
>W141078931
ATKC01000081
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ChDC F316 [ATKC]
56051
55975
-
Arg
TCG
[ENA]
¡û
>W141078961
ATKD01000117
Fusobacteriota
Fusobacterium animalis subsp. animalis ChDC F324 [ATKD]
29750
29826
+
Arg
TCG
[ENA]
¡û
>W141078986
ATKE01000047
Fusobacteriota
Fusobacterium hwasookii ChDC F145 [ATKE]
146309
146233
-
Arg
TCG
[ENA]
¡û
>WENV180875424
ODLQ01154216
[ODLQ] human metagenome; G_DNA_Tongue dorsum
117
193
+
Arg
TCG
[ENA]
¢þ
>WENV180881699
ODMA01043090
[ODMA] human metagenome; G_DNA_Supragingival plaque
153
77
-
Arg
TCG
[ENA]
¢þ
>WENV180888676
ODMN01002447
[ODMN] human metagenome; G_DNA_Supragingival plaque
4607
4531
-
Arg
ACG
[ENA]
¢þ
>WENV180889494
ODMN01050893
[ODMN] human metagenome; G_DNA_Supragingival plaque
576
652
+
Arg
TCG
[ENA]
¢þ
>WENV180891683
ODMQ01004926
[ODMQ] human metagenome; G_DNA_Supragingival plaque
1219
1143
-
Arg
ACG
[ENA]
¢þ
>WENV180951507
ODUH01027910
[ODUH] human metagenome; G_DNA_Subgingival plaque
1013
1089
+
Arg
TCG
[ENA]
¢þ
>WENV180964567
ODUO01004690
[ODUO] human metagenome; G_DNA_Supragingival plaque
330
406
+
Arg
TCG
[ENA]
¢þ
>WENV180974190
ODUW01111453
[ODUW] human metagenome; G_DNA_Supragingival plaque
17
93
+
Arg
ACG
[ENA]
¢þ
>WENV180975920
ODUY01030966
[ODUY] human metagenome; G_DNA_Supragingival plaque
277
201
-
Arg
TCG
[ENA]
¢þ
>WENV180987080
ODVK01004504
[ODVK] human metagenome; G_DNA_Supragingival plaque
3635
3559
-
Arg
TCG
[ENA]
¢þ
>WENV181009795
ODWE01214979
[ODWE] human metagenome; G_DNA_Supragingival plaque
134
210
+
Arg
TCG
[ENA]
¢þ
>WENV181019430
ODWU01003025
[ODWU] human metagenome; G_DNA_Supragingival plaque
5891
5967
+
Arg
TCG
[ENA]
¢þ
>WENV181075995
OEAP01001108
[OEAP] human metagenome; G_DNA_Supragingival plaque
14527
14451
-
Arg
TCG
[ENA]
¢þ
>WENV181125921
OEFU01105906
[OEFU] human metagenome; G_DNA_Saliva
86
162
+
Arg
TCG
[ENA]
¢þ
>WENV181135357
OEGG01012730
[OEGG] human metagenome; G_DNA_Tongue dorsum
806
730
-
Arg
TCG
[ENA]
¢þ
>WENV181143521
OEHM01001744
[OEHM] human metagenome; G_DNA_Supragingival plaque
2623
2547
-
Arg
ACG
[ENA]
¢þ
>WENV181177496
OEJS01003154
[OEJS] human metagenome; G_DNA_Supragingival plaque
3997
3921
-
Arg
ACG
[ENA]
¢þ
>WENV181426117
OGCQ01002839
[OGCQ] human gut metagenome; human gut
13579
13655
+
Arg
TCG
[ENA]
¢þ
>WENV181471267
OGEW01000160
[OGEW] metagenome; Human gut stool
10887
10963
+
Arg
TCG
[ENA]
¢þ
>WENV181510480
OGGR01000091
[OGGR] metagenome; Human gut stool
4922
4846
-
Arg
TCG
[ENA]
¢þ
>WENV181559405
OGIZ01001061
[OGIZ] metagenome; Human gut stool
3046
2970
-
Arg
TCG
[ENA]
¢þ
>WENV181582412
OGKB01005037
[OGKB] metagenome; Human gut stool
4043
4119
+
Arg
TCG
[ENA]
¢þ
>W141157879
AXNU01000069
Fusobacteriota
Fusobacterium nucleatum CTI-7 [AXNU]
5673
5749
+
Arg
TCG
[ENA]
¡û
>W141157918
AXNW01000001
Fusobacteriota
Fusobacterium nucleatum CTI-5 [AXNW]
23129
23053
-
Arg
TCG
[ENA]
¡û
>W141157993
AXNX01000020
Fusobacteriota
Fusobacterium nucleatum CTI-3 [AXNX]
75325
75401
+
Arg
TCG
[ENA]
¡û
>W141158046
AXNY01000043
Fusobacteriota
Fusobacterium nucleatum CTI-2 [AXNY]
4936
5012
+
Arg
TCG
[ENA]
¡û
>W141158081
AXNZ01000015
Fusobacteriota
Fusobacterium nucleatum CTI-1 [AXNZ]
139506
139582
+
Arg
TCG
[ENA]
¡û
>W141168158
AXUR01000027
Fusobacteriota
Fusobacterium nucleatum W1481 [AXUR]
48697
48621
-
Arg
TCG
[ENA]
¡û
>WENV181877644
OGXD01026963
[OGXD] human gut metagenome; faeces
705
629
-
Arg
TCG
[ENA]
¢þ
>W141221306
AZYU01000354
Fusobacteriota
Fusobacterium sp. CM21 [AZYU]
23303
23227
-
Arg
TCG
[ENA]
¡û
>WENV182600154
OJJF01020138
[OJJF] metagenome; faeces
11
87
+
Arg
TCG
[ENA]
¢þ
>WENV182867438
OKRR01026584
[OKRR] human gut metagenome; faeces
649
725
+
Arg
TCG
[ENA]
¢þ
>W141284886
JANB01000057
Fusobacteriota
Fusobacterium sp. CM1 [JANB]
54395
54319
-
Arg
TCG
[ENA]
¡û
>C181058809
CP022122
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ChDC F317 [CP022122]
1656423
1656347
-
Arg
TCG
-
¡û
>C181058894
CP022124
Fusobacteriota
Fusobacterium animalis ChDC F332 [CP022124]
2294082
2294006
-
Arg
TCG
-
¡û
>C181105023
CP024749
Fusobacteriota
Fusobacterium vincentii KCOM 2931 [CP024749]
2081900
2081976
+
Arg
TCG
-
¡û
>C181160879
CP028101
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [CP028101]
1089358
1089434
+
Arg
TCG
-
¡û
>C181161251
CP028109
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [CP028109]
2083592
2083516
-
Arg
TCG
-
¡û
>W09118637
ACDE01000001
Fusobacteriota
Fusobacterium vincentii 4_1_13 [ACDE]
5547
5623
+
Arg
TCG
[ENA]
¡û
>W09118683
ACDF01000034
Fusobacteriota
Fusobacterium animalis 7_1 [ACDF]
111087
111011
-
Arg
TCG
[ENA]
¡û
>W09119330
ACDS01000055
Fusobacteriota
Fusobacterium animalis D11 [ACDS]
181
257
+
Arg
TCG
[ENA]
¡û
>C141001791
CP003700
Fusobacteriota
Fusobacterium vincentii 3_1_36A2 [CP003700]
714069
714145
+
Arg
TCG
[Ensembl]
¡û
>W1910942271
NJGI01000001
Fusobacteriota
Fusobacterium polymorphum [NJGI]
128824
128748
-
Arg
TCG
[ENA]
¡û
>W1910942346
NJGJ01000001
Fusobacteriota
Fusobacterium animalis [NJGJ]
719147
719223
+
Arg
TCG
[ENA]
¡û
>W1910942363
NJGJ01000003
Fusobacteriota
Fusobacterium animalis [NJGJ]
5232
5156
-
Arg
TCG
[ENA]
¡û
>W1911160072
NPNC01000052
Fusobacteriota
Fusobacterium animalis subsp. animalis P2_LM [NPNC]
8873
8949
+
Arg
TCG
[ENA]
¡û
>W1911160126
NPND01000040
Fusobacteriota
Fusobacterium animalis subsp. animalis P2_CP [NPND]
8775
8851
+
Arg
TCG
[ENA]
¡û
>W1911596342
PNHC01000002
Fusobacteriota
Fusobacterium nucleatum UMB0249 [PNHC]
65799
65875
+
Arg
TCG
[ENA]
¡û
>W1810076299
PEIJ01000001
Fusobacteriota
Fusobacterium vincentii subsp. vincentii KCOM 2880 [PEIJ]
1615459
1615535
+
Arg
TCG
[ENA]
¡û
>C151016783
CP007062
Fusobacteriota
Fusobacterium animalis 7_1 [CP007062]
409622
409698
+
Arg
TCG
[Ensembl]
¡û
>C151016846
CP007064
Fusobacteriota
Fusobacterium vincentii 3_1_27 [CP007064, CP007065]
1606212
1606136
-
Arg
TCG
[Ensembl]
¡û
>C151097741
CP012713
Fusobacteriota
Fusobacterium animalis KCOM 1279 [CP012713]
1942504
1942428
-
Arg
TCG
-
¡û
>C151097780
CP012714
Fusobacteriota
Fusobacterium vincentii ChDC F8 KCOM 1231 [CP012714]
1327147
1327071
-
Arg
TCG
-
¡û
>C151097819
CP012715
Fusobacteriota
Fusobacterium animalis KCOM 1325 [CP012715]
1452842
1452766
-
Arg
TCG
-
¡û
>C151097840
CP012716
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ChDC F316 KCOM 1322 [CP012716]
1212918
1212994
+
Arg
TCG
-
¡û
>C151097867
CP012717
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum KCOM 1250 [CP012717]
4117
4193
+
Arg
TCG
-
¡û
>W10102852
ACPU01000001
Fusobacteriota
Fusobacterium vincentii 3_1_36A2 [ACPU]
5591
5667
+
Arg
TCG
[ENA]
¡û
>W10103272
ACQE01000125
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
2910
2834
-
Arg
TCG
[ENA]
¡û
>W10113547
ADGF01000042
Fusobacteriota
Fusobacterium vincentii 3_1_27 [ADGF]
128999
128923
-
Arg
TCG
[ENA]
¡û
>W10119116
ADVK01000035
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [ADVK]
22300
22224
-
Arg
TCG
[ENA]
¡û
>W11103008
ACPU01000001
Fusobacteriota
Fusobacterium vincentii 3_1_36A2 [ACPU]
5591
5667
+
Arg
TCG
[ENA]
¡û
>W11103428
ACQE01000125
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
2910
2834
-
Arg
TCG
[ENA]
¡û
>W11106150
ACUO01000022
Fusobacteriota
Fusobacterium animalis 11_3_2 [ACUO]
75886
75810
-
Arg
TCG
[ENA]
¡û
>W11115197
ADEE01000021
Fusobacteriota
Fusobacterium animalis 21_1A [ADEE]
85484
85560
+
Arg
TCG
[ENA]
¡û
>W11116836
ADGF01000042
Fusobacteriota
Fusobacterium vincentii 3_1_27 [ADGF]
128999
128923
-
Arg
TCG
[ENA]
¡û
>W11125336
ADVK01000035
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [ADVK]
22300
22224
-
Arg
TCG
[ENA]
¡û
>W11171132
AFQD01000264
Fusobacteriota
Fusobacterium animalis subsp. animalis ATCC 51191 [AFQD]
5014
4938
-
Arg
TCG
[ENA]
¡û
>W121009384
AGEH01000027
Fusobacteriota
Fusobacterium animalis subsp. animalis F0419 [AGEH]
171269
171345
+
Arg
TCG
[ENA]
¡û
>W121076754
AKBT01000001
Fusobacteriota
Fusobacterium animalis 7_1 [AKBT]
1573130
1573054
-
Arg
TCG
[ENA]
¡û
>W121077410
AKCE01000001
Fusobacteriota
Fusobacterium animalis subsp. animalis F0419 [AKCE]
12704
12628
-
Arg
TCG
[ENA]
¡û
>W121102434
AKXI01000064
Fusobacteriota
Fusobacterium vincentii subsp. fusiforme ATCC 51190 [AKXI]
1898
1974
+
Arg
TCG
[ENA]
¡û
>C131005525
CP003723
Fusobacteriota
Fusobacterium animalis 4_8 [CP003723]
1647239
1647163
-
Arg
TCG
[Ensembl]
¡û
>W1610744936
LMVH01000001
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum [LMVH]
260927
261003
+
Arg
TCG
[ENA]
¡û
>W1610889874
LRPY01000294
Fusobacteriota
Fusobacterium nucleatum [LRPY]
6124
6200
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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