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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151913 (45 seq.)
>W1710987346
LPUO01000034
Gammaproteobacteria
Aeromonas schubertii [LPUO]
85365
85289
-
Val
GAC
[ENA]
¡û
>W1710987349
LPUO01000034
Gammaproteobacteria
Aeromonas schubertii [LPUO]
85113
85037
-
Val
GAC
[ENA]
¡û
>W1711487168
MKFU01000001
Gammaproteobacteria
Aeromonas sobria [MKFU]
50861
50937
+
Val
GAC
[ENA]
¡û
>W1711487170
MKFU01000001
Gammaproteobacteria
Aeromonas sobria [MKFU]
51102
51178
+
Val
GAC
[ENA]
¡û
>W131211298
ATMI01000019
Gammaproteobacteria
Tatumella saanichensis NML 06-3099 [ATMI]
18951
18875
-
Val
GAC
[ENA]
¡û
>WENV013125
AACY020359904
Marine microbial communities from Global Ocean Sampling (GOS)
1268
1190
-
Val
GAC
[ENA]
>W141007220
AGWU01000020
Gammaproteobacteria
Aeromonas veronii AMC34 [AGWU]
679582
679658
+
Val
GAC
[ENA]
¡û
>WENV180285493
OBID01461322
[OBID] metagenome; sludge
230
154
-
Val
GAC
[ENA]
¢þ
>W141039470
ALXE01000045
Gammaproteobacteria
Pantoea sp. A4 [ALXE]
80874
80950
+
Val
GAC
[ENA]
¡û
>W141039472
ALXE01000045
Gammaproteobacteria
Pantoea sp. A4 [ALXE]
81043
81119
+
Val
GAC
[ENA]
¡û
>WENV170658041
JTFP01048201
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
136
60
-
Val
GAC
[ENA]
¢þ
>C181090968
CP023817
Gammaproteobacteria
Aeromonas sp. CU5 [CP023817]
1719141
1719217
+
Val
GAC
-
¡û
>C191017656
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
1661682
1661606
-
Val
GAC
-
¡û
>C191170478
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
2201498
2201574
+
Val
GAC
-
¡û
>C191170481
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
2201750
2201826
+
Val
GAC
-
¡û
>W1910620002
LJZX01000056
Gammaproteobacteria
Aeromonas sobria JF2635 [LJZX]
13803
13727
-
Val
GAC
[ENA]
¡û
>W1910620004
LJZX01000056
Gammaproteobacteria
Aeromonas sobria JF2635 [LJZX]
13542
13466
-
Val
GAC
[ENA]
¡û
>W1911178626
NQML01000027
Gammaproteobacteria
Aeromonas sobria TM12 [NQML]
20859
20783
-
Val
GAC
[ENA]
¡û
>W1911178628
NQML01000027
Gammaproteobacteria
Aeromonas sobria TM12 [NQML]
20598
20522
-
Val
GAC
[ENA]
¡û
>W1911178730
NQMM01000026
Gammaproteobacteria
Aeromonas sobria TM18 [NQMM]
3859
3935
+
Val
GAC
[ENA]
¡û
>W1911178732
NQMM01000026
Gammaproteobacteria
Aeromonas sobria TM18 [NQMM]
4120
4196
+
Val
GAC
[ENA]
¡û
>W1510065584
CDBS01000025
Gammaproteobacteria
Aeromonas caviae CECT 4221 [CDBS]
10455
10531
+
Val
GAC
[ENA]
¡û
>W1510065995
CDBW01000044
Gammaproteobacteria
Aeromonas sobria CECT 4245 [CDBW]
71317
71393
+
Val
GAC
[ENA]
¡û
>W1510065997
CDBW01000044
Gammaproteobacteria
Aeromonas sobria CECT 4245 [CDBW]
71558
71634
+
Val
GAC
[ENA]
¡û
>W1510066083
CDBY01000057
Gammaproteobacteria
Aeromonas simiae CIP 107798 [CDBY]
26317
26393
+
Val
GAC
[ENA]
¡û
>W1510066086
CDBY01000057
Gammaproteobacteria
Aeromonas simiae CIP 107798 [CDBY]
26569
26645
+
Val
GAC
[ENA]
¡û
>W1510066548
CDCE01000034
Gammaproteobacteria
Aeromonas diversa CECT 4254 [CDCE]
69260
69184
-
Val
GAC
[ENA]
¡û
>W1510066551
CDCE01000034
Gammaproteobacteria
Aeromonas diversa CECT 4254 [CDCE]
69008
68932
-
Val
GAC
[ENA]
¡û
>W1510067488
CDDB01000010
Gammaproteobacteria
Aeromonas schubertii CECT 4240 [CDDB]
177188
177264
+
Val
GAC
[ENA]
¡û
>W1510067489
CDDB01000010
Gammaproteobacteria
Aeromonas schubertii CECT 4240 [CDDB]
177274
177350
+
Val
GAC
[ENA]
¡û
>W1510067491
CDDB01000010
Gammaproteobacteria
Aeromonas schubertii CECT 4240 [CDDB]
177440
177516
+
Val
GAC
[ENA]
¡û
>W1511584693
LAVS01000014
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
6686
6610
-
Val
GAC
[ENA]
¡û
>W11150318
AEVO01000031
Gammaproteobacteria
Succinatimonas hippei YIT 12066 [AEVO]
13159
13083
-
Val
GAC
[ENA]
¡û
>C161050685
CP013067
Gammaproteobacteria
Aeromonas schubertii WL1483 [CP013067]
2269713
2269789
+
Val
GAC
[Ensembl]
¡û
>C161050687
CP013067
Gammaproteobacteria
Aeromonas schubertii WL1483 [CP013067]
2269879
2269955
+
Val
GAC
[Ensembl]
¡û
>W1610461076
FKKY01000017
Gammaproteobacteria
Aeromonas sp. EERV15 [FKKY]
72982
72906
-
Val
GAC
[ENA]
¡û
>W1610461078
FKKY01000017
Gammaproteobacteria
Aeromonas sp. EERV15 [FKKY]
72741
72665
-
Val
GAC
[ENA]
¡û
>W1610461183
FKKY02000017
Gammaproteobacteria
Aeromonas sp. EERV15 [FKKY]
72982
72906
-
Val
GAC
[ENA]
¡û
>W1610461185
FKKY02000017
Gammaproteobacteria
Aeromonas sp. EERV15 [FKKY]
72741
72665
-
Val
GAC
[ENA]
¡û
>W1610842290
LPUO01000034
Gammaproteobacteria
Aeromonas schubertii [LPUO]
85365
85289
-
Val
GAC
[ENA]
¡û
>W1610842293
LPUO01000034
Gammaproteobacteria
Aeromonas schubertii [LPUO]
85113
85037
-
Val
GAC
[ENA]
¡û
>W1710596113
FTMJ01000005
Gammaproteobacteria
Aeromonas sp. RU39B [FTMJ]
132505
132429
-
Val
GAC
[ENA]
¡û
>W1710596114
FTMJ01000005
Gammaproteobacteria
Aeromonas sp. RU39B [FTMJ]
132407
132331
-
Val
GAC
[ENA]
¡û
>W1710596115
FTMJ01000005
Gammaproteobacteria
Aeromonas sp. RU39B [FTMJ]
132302
132226
-
Val
GAC
[ENA]
¡û
>W1710596116
FTMJ01000005
Gammaproteobacteria
Aeromonas sp. RU39B [FTMJ]
132175
132099
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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