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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151943 (78 seq.)
>W1711066254
LSCR01000016
Actinomycetota
Atopobium deltae [LSCR]
8878
8954
+
Pro
TGG
[ENA]
¡û
>W1711093675
LTFF01000015
Actinomycetota
Olsenella sp. HMSC062G07 [LTFF]
15820
15896
+
Pro
TGG
[ENA]
¡û
>W1712038265
NFIU01000003
Actinomycetota
Olsenella sp. An290 [NFIU]
132614
132690
+
Pro
TGG
[ENA]
¡û
>W1712038485
NFIZ01000001
Actinomycetota
Olsenella sp. An285 [NFIZ]
251923
251999
+
Pro
TGG
[ENA]
¡û
>W1712038807
NFJF01000001
Actinomycetota
Olsenella sp. An270 [NFJF]
234133
234209
+
Pro
TGG
[ENA]
¡û
>W1712040231
NFKF01000005
Actinomycetota
Olsenella sp. An188 [NFKF]
108973
109049
+
Pro
TGG
[ENA]
¡û
>C171130124
LT635455
Actinomycetota
Olsenella timonensis Marseille-P2300 [LT635455]
1174059
1173983
-
Pro
TGG
-
¡û
>W131001356
AGXC01000002
Actinomycetota
Atopobium minutum 10063974 [AGXC]
242149
242073
-
Pro
TGG
[ENA]
¡û
>WENV180172554
OAVX01006699
[OAVX] human gut metagenome; faeces
739
815
+
Pro
TGG
[ENA]
¢þ
>WENV180334754
OBLF01047472
[OBLF] metagenome; feces
725
649
-
Pro
TGG
[ENA]
¢þ
>WENV180679139
OCVV012180530
[OCVV] gut metagenome; gut
95
19
-
Pro
TGG
[ENA]
¢þ
>WENV180679140
OCVV012180530
[OCVV] gut metagenome; gut
95
19
-
Pro
TGG
[ENA]
¢þ
>WENV180728839
ODGU01105165
[ODGU] human metagenome; G_DNA_Supragingival plaque
352
428
+
Pro
TGG
[ENA]
¢þ
>WENV180734988
ODGZ01044265
[ODGZ] human metagenome; G_DNA_Supragingival plaque
438
514
+
Pro
TGG
[ENA]
¢þ
>WENV180788491
ODIS01067891
[ODIS] human metagenome; G_DNA_Supragingival plaque
693
769
+
Pro
TGG
[ENA]
¢þ
>WENV180796774
ODJB01013474
[ODJB] human metagenome; G_DNA_Supragingival plaque
1260
1184
-
Pro
TGG
[ENA]
¢þ
>WENV180810138
ODJK01124855
[ODJK] human metagenome; G_DNA_Subgingival plaque
111
35
-
Pro
TGG
[ENA]
¢þ
>WENV180939661
ODTX01065010
[ODTX] human metagenome; G_DNA_Supragingival plaque
212
136
-
Pro
TGG
[ENA]
¢þ
>WENV180944230
ODUC01010807
[ODUC] human metagenome; G_DNA_Supragingival plaque
3455
3379
-
Pro
TGG
[ENA]
¢þ
>WENV180975386
ODUY01005620
[ODUY] human metagenome; G_DNA_Supragingival plaque
1151
1075
-
Pro
TGG
[ENA]
¢þ
>WENV180982041
ODVE01128921
[ODVE] human metagenome; G_DNA_Supragingival plaque
186
110
-
Pro
TGG
[ENA]
¢þ
>WENV180998522
ODVT01000671
[ODVT] human metagenome; G_DNA_Buccal mucosa
2831
2907
+
Pro
TGG
[ENA]
¢þ
>WENV181020243
ODWU01086623
[ODWU] human metagenome; G_DNA_Supragingival plaque
351
427
+
Pro
TGG
[ENA]
¢þ
>WENV181064951
ODYP01169490
[ODYP] human metagenome; G_DNA_Supragingival plaque
274
198
-
Pro
TGG
[ENA]
¢þ
>WENV181077663
OEAP01101503
[OEAP] human metagenome; G_DNA_Supragingival plaque
185
109
-
Pro
TGG
[ENA]
¢þ
>WENV181091932
OEBC01143535
[OEBC] human metagenome; G_DNA_Supragingival plaque
294
370
+
Pro
TGG
[ENA]
¢þ
>W141145512
AWUQ01000006
Actinomycetota
Atopobium sp. BV3Ac4 [AWUQ]
546060
546136
+
Pro
TGG
[ENA]
¡û
>WENV181690242
OGOY01025371
[OGOY] human gut metagenome; faeces
967
1043
+
Pro
TGG
[ENA]
¢þ
>W141170336
AXXR01000001
Actinomycetota
Atopobium fossor DSM 15642 [AXXR]
392432
392356
-
Pro
TGG
[ENA]
¡û
>WENV181731420
OGQD01000739
[OGQD] human gut metagenome; faeces
545
469
-
Pro
TGG
[ENA]
¢þ
>WENV181787378
OGRN01031306
[OGRN] human gut metagenome; faeces
1017
1093
+
Pro
TGG
[ENA]
¢þ
>WENV181801428
OGSB01000275
[OGSB] human gut metagenome; fecal sample 5 from infant 3
12731
12655
-
Pro
TGG
[ENA]
¢þ
>WENV181810645
OGSV01000710
[OGSV] human gut metagenome; fecal sample 4 from infant 3
2580
2656
+
Pro
TGG
[ENA]
¢þ
>WENV181869304
OGWX01024245
[OGWX] human gut metagenome; faeces
704
628
-
Pro
TGG
[ENA]
¢þ
>WENV181914058
OGYE01084509
[OGYE] human gut metagenome; faeces
342
418
+
Pro
TGG
[ENA]
¢þ
>WENV181982207
OHAG01036268
[OHAG] human gut metagenome; faeces
594
518
-
Pro
TGG
[ENA]
¢þ
>WENV181996295
OHAU01000002
[OHAU] human gut metagenome; faeces
182004
182080
+
Pro
TGG
[ENA]
¢þ
>WENV182292928
OHWB01018625
[OHWB] human gut metagenome; feces
731
807
+
Pro
TGG
[ENA]
¢þ
>WENV182336258
OHZS01008751
[OHZS] human gut metagenome; feces
1666
1742
+
Pro
TGG
[ENA]
¢þ
>WENV182376208
OIDD01006776
[OIDD] human gut metagenome; feces
2580
2656
+
Pro
TGG
[ENA]
¢þ
>WENV182390200
OIED01038940
[OIED] human gut metagenome; feces
240
316
+
Pro
TGG
[ENA]
¢þ
>WENV182815834
OJYV01000001
[OJYV] human gut metagenome; human gut
97785
97709
-
Pro
TGG
[ENA]
¢þ
>WENV182848467
OKKH01000596
[OKKH] human gut metagenome; human gut
1398
1474
+
Pro
TGG
[ENA]
¢þ
>WENV182860051
OKOR01000033
[OKOR] human gut metagenome; human gut
19628
19552
-
Pro
TGG
[ENA]
¢þ
>W141284953
JANC01000014
Actinomycetota
Olsenella uli MSTE5 [JANC]
387541
387465
-
Pro
TGG
[ENA]
¡û
>WENV182930086
OKUQ01028915
[OKUQ] human gut metagenome; feces
742
818
+
Pro
TGG
[ENA]
¢þ
>WENV183149522
OLOO01007707
[OLOO] human gut metagenome; faeces
737
661
-
Pro
TGG
[ENA]
¢þ
>WENV183205730
OLPZ01032803
[OLPZ] human gut metagenome; faeces
534
458
-
Pro
TGG
[ENA]
¢þ
>WENV183249856
OLRG01013553
[OLRG] human gut metagenome; faeces
1771
1695
-
Pro
TGG
[ENA]
¢þ
>WENV183298049
OLSM01029490
[OLSM] human gut metagenome; faeces
564
640
+
Pro
TGG
[ENA]
¢þ
>WENV183659426
OQWM01023988
[OQWM] human gut metagenome; human gut
1933
2009
+
Pro
TGG
[ENA]
¢þ
>WENV170636822
JFBN01306788
[JFBN] chicken gut metagenome; ceca of Broiler chicken
8790
8866
+
Pro
TGG
[ENA]
¢þ
>C191002891
AP018530
Actinomycetota
Olsenella sp. GAM18 [AP018530]
1262855
1262779
-
Pro
TGG
-
¡û
>W1910237166
FPKO01000007
Actinomycetota
Thermophilibacter mediterraneus Marseille-P3256 [FPKO]
405630
405706
+
Pro
TGG
[ENA]
¡û
>W1910237820
FPLI01000015
Actinomycetota
Olsenella phocaeensis Marseille-P2936 [FPLI]
14252
14328
+
Pro
TGG
[ENA]
¡û
>W1910281428
FQTO01000005
Actinomycetota
Thermophilibacter provencensis Marseille-P2912 [FQTO]
132675
132599
-
Pro
TGG
[ENA]
¡û
>W1910340176
FTLR01000010
Actinomycetota
Olsenella urininfantis Marseille-P3197 [FTLR]
179867
179943
+
Pro
TGG
[ENA]
¡û
>W1911765571
QXCY01000001
Actinomycetota
Promicromonospora thailandica SAI-039 [QXCY]
712675
712601
-
Pro
TGG
[ENA]
¡û
>W1810514179
QBUG01000001
Actinomycetota
Promicromonospora sp. AC04 [QBUG]
513529
513455
-
Pro
TGG
[ENA]
¡û
>W1810573667
QEKX01000001
Actinomycetota
Promicromonospora sukumoe SAI-064 [QEKX]
1739826
1739900
+
Pro
TGG
[ENA]
¡û
>W1810830981
QSNG01000001
Actinomycetota
Paratractidigestivibacter faecalis KCTC 15699 [QSNG]
1018215
1018139
-
Pro
TGG
[ENA]
¡û
>C151090399
CP012069
Actinomycetota
Olsenella sp. oral taxon 807 F0089 [CP012069]
1695748
1695824
+
Pro
TGG
-
¡û
>C10109998
CP002106
Actinomycetota
Olsenella uli DSM 7084 [CP002106]
881957
881881
-
Pro
TGG
[Ensembl]
¡û
>C11111559
CP002810
Actinomycetota
Isoptericola variabilis 225 [CP002810]
1172470
1172544
+
Pro
TGG
[Ensembl]
¡û
>W1511685537
LFOD01000039
Actinomycetota
Mycolicibacterium conceptionense MLE [LFOD]
17318
17394
+
Pro
CGG
[ENA]
¡û
>W1610120942
CZPU01000012
Actinomycetota
Olsenella massiliensis SIT9 [CZPU]
85944
85868
-
Pro
TGG
[ENA]
¡û
>W121000552
ACVE01000014
Actinomycetota
Olsenella sp. oral taxon 809 oral taxon 809 str. F0356 [ACVE]
45037
44961
-
Pro
TGG
[ENA]
¡û
>W1610528796
JQBO01000003
Actinomycetota
Atopobium minutum [JQBO]
387880
387956
+
Pro
TGG
[ENA]
¡û
>W1610530054
JQCO01000001
Actinomycetota
Olsenella uli DSM 7084 [JQCO]
856749
856825
+
Pro
TGG
[ENA]
¡û
>W1610906824
LSCR01000016
Actinomycetota
Atopobium deltae [LSCR]
8878
8954
+
Pro
TGG
[ENA]
¡û
>W1710123646
CZPU01000012
Actinomycetota
Olsenella massiliensis SIT9 [CZPU]
85944
85868
-
Pro
TGG
[ENA]
¡û
>W1710535071
FNSH01000001
Actinomycetota
Atopobium minutum [FNSH]
407695
407771
+
Pro
TGG
[ENA]
¡û
>W1710540437
FNWT01000016
Actinomycetota
Parafannyhessea umbonata [FNWT]
9062
8986
-
Pro
TGG
[ENA]
¡û
>W1710552077
FOGP01000002
Actinomycetota
Parafannyhessea umbonata [FOGP]
137950
138026
+
Pro
TGG
[ENA]
¡û
>W1710600593
FUWQ01000002
Actinomycetota
Olsenella sp. KH1P3 KH1P3 [FUWQ]
131979
132055
+
Pro
TGG
[ENA]
¡û
>W1710604071
FUZQ01000007
Actinomycetota
Krasilnikoviella flava [FUZQ]
98527
98601
+
Pro
TGG
[ENA]
¡û
>W1710630386
JQBO01000003
Actinomycetota
Atopobium minutum [JQBO]
387880
387956
+
Pro
TGG
[ENA]
¡û
>W1710631644
JQCO01000001
Actinomycetota
Olsenella uli DSM 7084 [JQCO]
856749
856825
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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