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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151976 (19 seq.)
>W131164831
ARBC01000024
Gammaproteobacteria
Lamprocystis purpurea DSM 4197 [ARBC]
100759
100683
-
Arg
CCG
[ENA]
¡û
>WENV170621323
FUWD013055379
[FUWD] metagenome; unknown
2293
2217
-
Arg
CCG
[ENA]
¢þ
>WENV170629500
FUWD013271813
[FUWD] metagenome; unknown
2293
2217
-
Arg
CCG
[ENA]
¢þ
>C181044151
CP020370
Gammaproteobacteria
Candidatus Thiodictyon syntrophicum Cad16T [CP020370]
1092474
1092398
-
Arg
CCG
-
¡û
>W09126339
ACJO01000010
Gammaproteobacteria
Halothiobacillus neapolitanus c2 [ACJO]
90019
90095
+
Arg
CCG
[ENA]
¡û
>W09133825
ACQQ01000012
Gammaproteobacteria
Allochromatium vinosum DSM 180 [ACQQ]
39440
39364
-
Arg
CCG
[ENA]
¡û
>W1810236309
PPGH01000035
Gammaproteobacteria
Chromatium okenii LaCa [PPGH]
632295
632371
+
Arg
CCG
[ENA]
¡û
>C10101237
CP001896
Gammaproteobacteria
Allochromatium vinosum DSM 180 [CP001896]
1712035
1711959
-
Arg
CCG
[Ensembl]
¡û
>C10107638
CP001801
Gammaproteobacteria
Halothiobacillus neapolitanus c2 [CP001801]
1051176
1051100
-
Arg
CCG
[Ensembl]
¡û
>W11176145
AFWV01000001
Gammaproteobacteria
Thiocapsa marina 5811 [AFWV]
179240
179164
-
Arg
CCG
[ENA]
¡û
>W11178619
AGFC01000026
Gammaproteobacteria
Thiocystis violascens DSM 198 [AGFC]
22893
22817
-
Arg
CCG
[ENA]
¡û
>C121007004
CP003154
Gammaproteobacteria
Thiocystis violascens DSM 198 [CP003154]
4856969
4857045
+
Arg
CCG
[Ensembl]
¡û
>C161093396
CP016027
Gammaproteobacteria
Halothiobacillus sp. LS2 [CP016027]
1164363
1164439
+
Arg
CCG
[Ensembl]
¡û
>W1610085775
CVPF01000038
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
83200
83276
+
Arg
CCG
[ENA]
¡û
>W1610516284
JABX01000064
Gammaproteobacteria
Thiohalocapsa sp. ML1 [JABX]
14848
14924
+
Arg
CCG
[ENA]
¡û
>W1710090364
CVPF01000038
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
83200
83276
+
Arg
CCG
[ENA]
¡û
>W1710529449
FNNZ01000002
Gammaproteobacteria
Thiocapsa roseopersicina [FNNZ]
136768
136844
+
Arg
CCG
[ENA]
¡û
>W1710530591
FNOW01000009
Gammaproteobacteria
Allochromatium warmingii [FNOW]
22631
22707
+
Arg
CCG
[ENA]
¡û
>W1710611626
JABX01000064
Gammaproteobacteria
Thiohalocapsa sp. ML1 [JABX]
14848
14924
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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