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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151989 (87 seq.)
>W1710786630
LJJB01000007
Bacillota
Brevibacillus choshinensis [LJJB]
1211885
1211961
+
Pro
GGG
[ENA]
¡û
>W1710876775
LMPN01000023
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
132315
132391
+
Pro
GGG
[ENA]
¡û
>W1711009625
LQQV01000013
Bacillota
Brevibacillus parabrevis [LQQV]
151912
151988
+
Pro
GGG
[ENA]
¡û
>W1711081344
LSSO01000172
Bacillota
Brevibacillus sp. SKDU10 [LSSO]
98604
98528
-
Pro
GGG
[ENA]
¡û
>W1711168633
LVYG01000002
Bacillota
Brevibacillus brevis [LVYG]
351624
351700
+
Pro
GGG
[ENA]
¡û
>W1711208477
LXGJ01000032
Bacillota
Brevibacillus sp. WF146 [LXGJ]
24525
24601
+
Pro
GGG
[ENA]
¡û
>W1711208478
LXGJ01000032
Bacillota
Brevibacillus sp. WF146 [LXGJ]
24922
24998
+
Pro
GGG
[ENA]
¡û
>W1711326436
MBFH01000009
Bacillota
Brevibacillus laterosporus [MBFH]
94461
94537
+
Pro
GGG
[ENA]
¡û
>W1711800003
MXAR01000017
Bacillota
Brevibacillus brevis [MXAR]
72652
72576
-
Pro
GGG
[ENA]
¡û
>W131006786
AHKL01000032
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
384409
384485
+
Pro
GGG
[ENA]
¡û
>W131086486
AOBR01000055
Bacillota
Brevibacillus agri BAB-2500 [AOBR]
40166
40090
-
Pro
GGG
[ENA]
¡û
>W131104088
APBN01000002
Bacillota
Brevibacillus borstelensis AK1 [APBN]
314570
314494
-
Pro
GGG
[ENA]
¡û
>W131104089
APBN01000002
Bacillota
Brevibacillus borstelensis AK1 [APBN]
312210
312134
-
Pro
GGG
[ENA]
¡û
>W131170799
ARFS01000071
Bacillota
Brevibacillus laterosporus DSM 25 [ARFS]
149269
149193
-
Pro
GGG
[ENA]
¡û
>W141026734
AKYF01000010
Bacillota
Brevibacillus brevis X23 [AKYF]
381940
382016
+
Pro
GGG
[ENA]
¡û
>W141080388
ATNE01000008
Bacillota
Brevibacillus thermoruber 423 [ATNE]
212355
212431
+
Pro
GGG
[ENA]
¡û
>W141080389
ATNE01000008
Bacillota
Brevibacillus thermoruber 423 [ATNE]
212752
212828
+
Pro
GGG
[ENA]
¡û
>W141093468
AVBJ01000005
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
3582
3658
+
Pro
GGG
[ENA]
¡û
>W141152313
AXBT01000002
Bacillota
Brevibacillus laterosporus PE36 [AXBT]
116051
115975
-
Pro
GGG
[ENA]
¡û
>W141185435
AYJU01000001
Bacillota
Brevibacillus panacihumi W25 [AYJU]
390835
390759
-
Pro
GGG
[ENA]
¡û
>W141240289
CAGD01000007
Bacillota
Brevibacillus laterosporus GI-9 [CAGD]
115076
115000
-
Pro
GGG
[ENA]
¡û
>W141240980
CAGW01000071
Bacillota
Brevibacillus massiliensis phR [CAGW]
83670
83594
-
Pro
GGG
[ENA]
¡û
>W141288866
JAQG01000100
Bacillota
Brevibacillus borstelensis Jul-96 [JAQG]
107455
107531
+
Pro
GGG
[ENA]
¡û
>W141288867
JAQG01000106
Bacillota
Brevibacillus borstelensis Jul-96 [JAQG]
199
275
+
Pro
GGG
[ENA]
¡û
>W141291556
JATL01000002
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
206201
206277
+
Pro
GGG
[ENA]
¡û
>WENV170582583
FUFK010092793
[FUFK] metagenome; unknown
318
394
+
Pro
GGG
[ENA]
¢þ
>C181027591
CP017705
Bacillota
Brevibacillus laterosporus DSM 25 [CP017705]
4247022
4247098
+
Pro
GGG
-
¡û
>C181030588
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
1536857
1536933
+
Pro
GGG
-
¡û
>C181082064
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
2694848
2694924
+
Pro
GGG
-
¡û
>C181118980
CP025545
Bacillota
Brevibacillus laterosporus ZQ2 [CP025545]
2071270
2071346
+
Pro
GGG
-
¡û
>C181188454
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
2561096
2561172
+
Pro
GGG
-
¡û
>C191041932
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
3439245
3439169
-
Pro
GGG
-
¡û
>C191089197
CP032410
Bacillota
Brevibacillus laterosporus E7593-50 [CP032410]
2323153
2323077
-
Pro
GGG
-
¡û
>C191095582
CP032848
Bacillota
Brevibacillus laterosporus Bl-zj [CP032848]
3504518
3504594
+
Pro
GGG
-
¡û
>C191126996
CP034541
Bacillota
Brevibacillus marinus SCSIO 07484 [CP034541]
2279426
2279350
-
Pro
GGG
-
¡û
>C191207643
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
3625071
3624995
-
Pro
GGG
-
¡û
>W141728028
JNFS01000002
Bacillota
Brevibacillus laterosporus [JNFS]
610244
610320
+
Pro
GGG
[ENA]
¡û
>W141808955
JPRB01000021
Bacillota
Brevibacillus borstelensis cifa_chp40 [JPRB]
36057
36133
+
Pro
GGG
[ENA]
¡û
>W141808956
JPRB01000021
Bacillota
Brevibacillus borstelensis cifa_chp40 [JPRB]
38518
38594
+
Pro
GGG
[ENA]
¡û
>W141819448
JQMH01000006
Bacillota
Brevibacillus thermoruber PM1 [JQMH]
725035
724959
-
Pro
GGG
[ENA]
¡û
>W141819449
JQMH01000006
Bacillota
Brevibacillus thermoruber PM1 [JQMH]
724638
724562
-
Pro
GGG
[ENA]
¡û
>W1910181733
BJMH01000009
Bacillota
Brevibacillus parabrevis NBRC 12334 [BJMH]
57867
57943
+
Pro
GGG
[ENA]
¡û
>W1910183509
BJNU01000011
Bacillota
Brevibacillus brevis NBRC 15304 [BJNU]
19634
19710
+
Pro
GGG
[ENA]
¡û
>W1910183887
BJOD01000001
Bacillota
Brevibacillus agri NBRC 15538 [BJOD]
83815
83739
-
Pro
GGG
[ENA]
¡û
>W1910183943
BJOE01000009
Bacillota
Brevibacillus centrosporus NBRC 15540 [BJOE]
106062
105986
-
Pro
GGG
[ENA]
¡û
>W1910184195
BJOK01000005
Bacillota
Brevibacillus borstelensis NBRC 15714 [BJOK]
57296
57220
-
Pro
GGG
[ENA]
¡û
>W1910184196
BJOK01000005
Bacillota
Brevibacillus borstelensis NBRC 15714 [BJOK]
54835
54759
-
Pro
GGG
[ENA]
¡û
>W1910184248
BJOL01000002
Bacillota
Brevibacillus formosus NBRC 15716 [BJOL]
19751
19827
+
Pro
GGG
[ENA]
¡û
>W1910184320
BJON01000002
Bacillota
Brevibacillus reuszeri NBRC 15719 [BJON]
343994
344070
+
Pro
GGG
[ENA]
¡û
>C09101471
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
2535948
2536024
+
Pro
GGG
[Ensembl]
¡û
>W1910873547
NDIP01000010
Bacillota
Brevibacillus laterosporus Lak 1210 [NDIP]
39767
39691
-
Pro
GGG
[ENA]
¡û
>W1911119429
NOLX01000001
Bacillota
Brevibacillus laterosporus OSY-I1 [NOLX]
139716
139640
-
Pro
GGG
[ENA]
¡û
>W1911681059
QJSB01000006
Bacillota
Brevibacillus laterosporus BON707 [QJSB]
116942
116866
-
Pro
GGG
[ENA]
¡û
>W1810001156
BEXF01000003
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
195203
195127
-
Pro
GGG
[ENA]
¡û
>W1810270994
PRKQ01000040
Bacillota
Brevibacillus laterosporus BGSP11 [PRKQ]
48771
48847
+
Pro
GGG
[ENA]
¡û
>W1810271111
PRKR01000079
Bacillota
Brevibacillus laterosporus BGSP9 [PRKR]
5606
5682
+
Pro
GGG
[ENA]
¡û
>W1810271201
PRKS01000028
Bacillota
Brevibacillus laterosporus BGSP7 [PRKS]
81798
81874
+
Pro
GGG
[ENA]
¡û
>W1810389853
PXXZ01000006
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
363119
363195
+
Pro
GGG
[ENA]
¡û
>W1810391276
PXZL01000013
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
369334
369410
+
Pro
GGG
[ENA]
¡û
>W1810391360
PXZM01000003
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
448105
448029
-
Pro
GGG
[ENA]
¡û
>W1810391572
PXZN01000064
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
4243
4167
-
Pro
GGG
[ENA]
¡û
>W1810391639
PXZO01000052
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
151195
151119
-
Pro
GGG
[ENA]
¡û
>W1810658150
QJJD01000013
Bacillota
Brevibacillus laterosporus MG64 [QJJD]
12137
12213
+
Pro
GGG
[ENA]
¡û
>W1810787361
QRDR01000004
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
363202
363278
+
Pro
GGG
[ENA]
¡û
>W1810888324
QUQX01000004
Bacillota
Brevibacillus sp. VP [QUQX]
258084
258160
+
Pro
GGG
[ENA]
¡û
>C151035295
CP007806
Bacillota
Brevibacillus laterosporus LMG 15441 [CP007806]
1995192
1995268
+
Pro
GGG
[Ensembl]
¡û
>W1511500225
JXAV01000018
Bacillota
Brevibacillus borstelensis LChuR05 [JXAV]
32110
32186
+
Pro
GGG
[ENA]
¡û
>W1511500226
JXAV01000018
Bacillota
Brevibacillus borstelensis LChuR05 [JXAV]
34570
34646
+
Pro
GGG
[ENA]
¡û
>W1511523206
JYCD01000071
Bacillota
Aeribacillus pallidus GS3372 [JYCD]
24596
24672
+
Pro
GGG
[ENA]
¡û
>W1511523207
JYCD01000071
Bacillota
Aeribacillus pallidus GS3372 [JYCD]
24994
25070
+
Pro
GGG
[ENA]
¡û
>W1511629660
LDCN01000002
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
369026
369102
+
Pro
GGG
[ENA]
¡û
>W1511645839
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
2009190
2009266
+
Pro
GGG
[ENA]
¡û
>W1511699596
LGIQ01000009
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
1185715
1185639
-
Pro
GGG
[ENA]
¡û
>W1511700186
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
2089758
2089682
-
Pro
GGG
[ENA]
¡û
>W11172367
AFRV01000007
Bacillota
Brevibacillus laterosporus LMG 15441 [AFRV]
104255
104331
+
Pro
GGG
[ENA]
¡û
>W121084993
AKIX01000010
Bacillota
Brevibacillus sp. BC25 [AKIX]
19855
19931
+
Pro
GGG
[ENA]
¡û
>W121086607
AKKB01000118
Bacillota
Brevibacillus sp. CF112 [AKKB]
83829
83753
-
Pro
GGG
[ENA]
¡û
>W1610650485
LJJB01000007
Bacillota
Brevibacillus choshinensis [LJJB]
1211885
1211961
+
Pro
GGG
[ENA]
¡û
>W1610739121
LMPN01000023
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
132315
132391
+
Pro
GGG
[ENA]
¡û
>W1610858145
LQQV01000013
Bacillota
Brevibacillus parabrevis [LQQV]
151912
151988
+
Pro
GGG
[ENA]
¡û
>W1610920179
LSSO01000172
Bacillota
Brevibacillus sp. SKDU10 [LSSO]
98604
98528
-
Pro
GGG
[ENA]
¡û
>W1610978428
LVYG01000002
Bacillota
Brevibacillus brevis [LVYG]
351624
351700
+
Pro
GGG
[ENA]
¡û
>W1610996239
LXGJ01000032
Bacillota
Brevibacillus sp. WF146 [LXGJ]
24525
24601
+
Pro
GGG
[ENA]
¡û
>W1610996240
LXGJ01000032
Bacillota
Brevibacillus sp. WF146 [LXGJ]
24922
24998
+
Pro
GGG
[ENA]
¡û
>W1611063289
MBFH01000009
Bacillota
Brevibacillus laterosporus [MBFH]
94461
94537
+
Pro
GGG
[ENA]
¡û
>W1710081075
BDFB01000004
Bacillota
Brevibacillus brevis [BDFB]
1150959
1150883
-
Pro
GGG
[ENA]
¡û
>W1710566167
FORT01000012
Bacillota
Brevibacillus centrosporus OK042 [FORT]
49655
49731
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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