This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152004 (32 seq.)
>W1710863575
LMFF01000016
Alphaproteobacteria
Rhizobium sp. Root491 [LMFF]
336878
336954
+
Arg
TCT
[ENA]
¡û
>W1711213553
LXKL01000001
Alphaproteobacteria
Agrobacterium sp. 13-2099-1-2 [LXKL]
506395
506319
-
Arg
TCT
[ENA]
¡û
>W1711213959
LXKT01000001
Alphaproteobacteria
Agrobacterium tumefaciens [LXKT]
506831
506755
-
Arg
TCT
[ENA]
¡û
>W1711214073
LXKV01000012
Alphaproteobacteria
Agrobacterium tumefaciens [LXKV]
507461
507385
-
Arg
TCT
[ENA]
¡û
>W1711214114
LXKW01000012
Alphaproteobacteria
Agrobacterium tumefaciens [LXKW]
187222
187298
+
Arg
TCT
[ENA]
¡û
>W1711214220
LXKY01000001
Alphaproteobacteria
Agrobacterium tumefaciens [LXKY]
156422
156346
-
Arg
TCT
[ENA]
¡û
>W131111355
APLP01000007
Alphaproteobacteria
Agrobacterium tumefaciens WRT31 [APLP]
287265
287341
+
Arg
TCT
[ENA]
¡û
>W131178171
ARLJ01000016
Alphaproteobacteria
Agrobacterium sp. 10MFCol1.1 [ARLJ]
110599
110523
-
Arg
TCT
[ENA]
¡û
>W1711722507
MTKI01000003
Alphaproteobacteria
Agrobacterium tumefaciens [MTKI]
12771
12695
-
Arg
TCT
[ENA]
¡û
>W141064012
APJV01000004
Alphaproteobacteria
Agrobacterium tumefaciens P4 [APJV]
274393
274469
+
Arg
TCT
[ENA]
¡û
>WENV183742330
PJUH01009563
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
148
224
+
Arg
TCT
[ENA]
¢þ
>C191097627
CP032917
Alphaproteobacteria
Agrobacterium tumefaciens 15955 [CP032917, CP032918]
1398960
1399036
+
Arg
TCT
-
¡û
>C191097683
CP032921
Alphaproteobacteria
Agrobacterium tumefaciens 1D1108 [CP032921, CP032922]
1436797
1436873
+
Arg
TCT
-
¡û
>C191098285
CP033027
Alphaproteobacteria
Agrobacterium tumefaciens A6 [CP033027, CP033028]
1464322
1464398
+
Arg
TCT
-
¡û
>C191188687
CP041204
Alphaproteobacteria
Rhizobium sp. NIBRBAC000502774 [CP041204]
2658532
2658608
+
Arg
TCT
-
¡û
>W1910199436
FBWA01000004
Alphaproteobacteria
Agrobacterium tumefaciens 1 str. TT111 [FBWA]
320146
320222
+
Arg
TCT
[ENA]
¡û
>W1910199485
FBWB01000009
Alphaproteobacteria
Agrobacterium tumefaciens 1 str. S56 [FBWB]
49356
49280
-
Arg
TCT
[ENA]
¡û
>W1910200073
FCNM01000004
Alphaproteobacteria
Agrobacterium tumefaciens str. CFBP 5771 [FCNM]
257813
257889
+
Arg
TCT
[ENA]
¡û
>W1911496260
OCMJ01000004
Alphaproteobacteria
Rhizobium sp. AN5 [OCMJ]
1582665
1582741
+
Arg
TCT
[ENA]
¡û
>W1911497029
OCNC01000004
Alphaproteobacteria
Rhizobium sp. AN6A [OCNC]
2825763
2825839
+
Arg
TCT
[ENA]
¡û
>C151078513
CP011246
Alphaproteobacteria
Agrobacterium fabacearum Ach5 [CP011246, CP011247]
1779733
1779809
+
Arg
TCT
[Ensembl]
¡û
>C11100781
CP002248
Alphaproteobacteria
Agrobacterium fabacearum H13-3 [CP002248, CP002249]
1773071
1773147
+
Arg
TCT
[Ensembl]
¡û
>W1511480713
JWJH01000017
Alphaproteobacteria
Rhizobium nepotum Jul-39 [JWJH]
163723
163799
+
Arg
TCT
[ENA]
¡û
>C161005606
CP007225
Alphaproteobacteria
Agrobacterium tumefaciens LBA4213 (Ach5) [CP007225, CP007226]
1718907
1718983
+
Arg
TCT
[Ensembl]
¡û
>W121021672
AGVZ01000005
Alphaproteobacteria
Agrobacterium tumefaciens 5A [AGVZ]
396605
396681
+
Arg
TCT
[ENA]
¡û
>W1610725921
LMFF01000016
Alphaproteobacteria
Rhizobium sp. Root491 [LMFF]
336878
336954
+
Arg
TCT
[ENA]
¡û
>W1611000557
LXKL01000001
Alphaproteobacteria
Agrobacterium sp. 13-2099-1-2 [LXKL]
506395
506319
-
Arg
TCT
[ENA]
¡û
>W1611000963
LXKT01000001
Alphaproteobacteria
Agrobacterium tumefaciens [LXKT]
506831
506755
-
Arg
TCT
[ENA]
¡û
>W1611001077
LXKV01000012
Alphaproteobacteria
Agrobacterium tumefaciens [LXKV]
507461
507385
-
Arg
TCT
[ENA]
¡û
>W1611001118
LXKW01000012
Alphaproteobacteria
Agrobacterium tumefaciens [LXKW]
187222
187298
+
Arg
TCT
[ENA]
¡û
>W1611001224
LXKY01000001
Alphaproteobacteria
Agrobacterium tumefaciens [LXKY]
156422
156346
-
Arg
TCT
[ENA]
¡û
>W1710084236
BDLN01000001
Alphaproteobacteria
Rhizobium sp. TBD182 [BDLN]
110661
110585
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK