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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152038 (11 seq.)
>W131155610
AQOS01000015
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
8428
8352
-
Gly
TCC
[ENA]
¡û
>W131231943
AUIW01000002
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
288784
288860
+
Gly
TCC
[ENA]
¡û
>C025914
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
253608
253532
-
Gly
TCC
[Ensembl]
¡û
>C025952
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
599825
599749
-
Gly
TCC
[Ensembl]
¡û
>WENV181227506
OFDN01013551
[OFDN] hot springs metagenome; Water
1350
1274
-
Gly
TCC
[ENA]
¢þ
>C181003554
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
637989
638065
+
Gly
TCC
-
¡û
>C191189997
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1033383
1033459
+
Gly
TCC
-
¡û
>C11123205
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
604195
604119
-
Gly
TCC
[Ensembl]
¡û
>C121009732
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
1334736
1334812
+
Gly
TCC
[Ensembl]
¡û
>C161067094
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
1370844
1370920
+
Gly
TCC
[Ensembl]
¡û
>W121056032
AIJQ01000004
Deinococcota
Thermus parvatiensis RL [AIJQ]
185640
185564
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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