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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152041 (128 seq.)
>W1710863523
LMFE01000010
Actinomycetota
Nocardia sp. Root136 [LMFE]
153789
153715
-
Met
CAT
[ENA]
¡û
>W1711006943
LQOT01000033
Actinomycetota
Mycolicibacter engbaekii [LQOT]
36706
36782
+
Met
CAT
[ENA]
¡û
>W1711007228
LQOZ01000028
Actinomycetota
Mycolicibacter hiberniae [LQOZ]
88272
88196
-
Met
CAT
[ENA]
¡û
>W1711050413
LRRM01000028
Actinomycetota
Nocardia brasiliensis [LRRM]
65698
65622
-
Met
CAT
[ENA]
¡û
>W1711069483
LSFR01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
463586
463662
+
Met
CAT
[ENA]
¡û
>W1711080639
LSRE01000044
Actinomycetota
Tsukamurella pseudospumae [LSRE]
85100
85176
+
Met
CAT
[ENA]
¡û
>W1711080725
LSRG01000013
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
342795
342871
+
Met
CAT
[ENA]
¡û
>W1711080812
LSRI01000001
Actinomycetota
Tsukamurella pulmonis [LSRI]
1028801
1028727
-
Met
CAT
[ENA]
¡û
>W1711080848
LSRJ01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
364169
364245
+
Met
CAT
[ENA]
¡û
>W1711178419
LWGR01000008
Actinomycetota
Nocardia terpenica [LWGR]
68459
68383
-
Met
CAT
[ENA]
¡û
>W1711276572
LZIG01000052
Actinomycetota
Mycobacterium sp. 852002-51759_SCH5129042 [LZIG]
116728
116804
+
Met
CAT
[ENA]
¡û
>W1711279062
LZKG01000085
Actinomycetota
Mycolicibacter sinensis sinense [LZKG]
34812
34736
-
Met
CAT
[ENA]
¡û
>W1711280191
LZLE01000029
Actinomycetota
Mycobacterium sp. 1423905.2 [LZLE]
11471
11395
-
Met
CAT
[ENA]
¡û
>W1711281481
LZMF01000059
Actinomycetota
Mycolicibacter sinensis sinense [LZMF]
18466
18542
+
Met
CAT
[ENA]
¡û
>W1711281727
LZMK01000220
Actinomycetota
Nocardia sp. 852002-20019_SCH5090214 [LZMK]
8533
8457
-
Met
CAT
[ENA]
¡û
>W1711281791
LZML01000211
Actinomycetota
Nocardia sp. 852002-51101_SCH5132738 [LZML]
100034
100110
+
Met
CAT
[ENA]
¡û
>W1711285849
LZSP01000089
Actinomycetota
Nocardia sp. 852002-51244_SCH5132740 [LZSP]
8014
7938
-
Met
CAT
[ENA]
¡û
>W131161768
AQXZ01000017
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 [AQXZ]
427335
427411
+
Met
CAT
[ENA]
¡û
>C171072533
CP018082
Actinomycetota
Nocardia mangyaensis Y48 [CP018082]
1664079
1664155
+
Met
CAT
-
¡û
>WENV180031986
FTJU01002502
[FTJU] metagenome; soil
74
1
-
Ile2
CAT
[ENA]
¢þ
>WENV180390452
OBPK01164167
[OBPK] marine metagenome; Sterile flask
229
303
+
Ile2
CAT
[ENA]
¢þ
>WENV180693676
OCZS011440516
[OCZS] soil metagenome; soil
171
95
-
Ile2
CAT
[ENA]
¢þ
>W141231409
BAUA01000020
Actinomycetota
Nocardia brasiliensis IFM 10847 [BAUA]
2175
2099
-
Met
CAT
[ENA]
¡û
>W141278565
JAFQ01000002
Actinomycetota
Nocardia sp. BMG51109 [JAFQ]
3760
3686
-
Met
CAT
[ENA]
¡û
>W141278582
JAFQ01000004
Actinomycetota
Nocardia sp. BMG51109 [JAFQ]
4748365
4748441
+
Met
CAT
[ENA]
¡û
>WENV183802305
PVBE010747101
[PVBE] marine metagenome; water
290
364
+
Ile2
CAT
[ENA]
¢þ
>PL191001662
LR134460
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:18 (LR134460)
117193
117117
-
Met
CAT
[ENA]
¡û
>C181035823
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
3137410
3137486
+
Met
CAT
-
¡û
>C181090271
CP023778
Actinomycetota
Nocardia terpenica NC_YFY_NT001 [CP023778]
2571462
2571536
+
Met
CAT
-
¡û
>C191117168
CP033972
Actinomycetota
Gordonia insulae MMS17-SY073 [CP033972]
117237
117161
-
Met
CAT
-
¡û
>C191193477
LR131273
Actinomycetota
Tsukamurella paurometabola NCTC10741 [LR131273]
3141919
3141844
-
Met
CAT
-
¡û
>C191208368
LR134352
Actinomycetota
Nocardia asteroides NCTC11293 [LR134352]
2658141
2658215
+
Met
CAT
-
¡û
>C191208415
LR134353
Actinomycetota
Mycolicibacterium flavescens NCTC10271 [LR134353]
1927447
1927523
+
Met
CAT
-
¡û
>W141769081
JOFP01000004
Actinomycetota
Pilimelia anulata [JOFP]
494988
495062
+
Met
CAT
[ENA]
¡û
>W141774715
JOJF01000038
Actinomycetota
Nocardia sp. NRRL WC-3656 [JOJF]
8563
8487
-
Met
CAT
[ENA]
¡û
>W09110307
ABVA01000005
Actinomycetota
Tsukamurella paurometabola DSM 20162 [ABVA]
359090
359016
-
Met
CAT
[ENA]
¡û
>W1910897056
NGAF01000005
Actinomycetota
Nocardia cerradoensis CNM20130759 [NGAF]
188501
188575
+
Met
CAT
[ENA]
¡û
>W1911717717
QQQF01000108
Actinomycetota
Tsukamurella pulmonis PW1004 [QQQF]
15611
15685
+
Met
CAT
[ENA]
¡û
>W1810173195
PJMW01000004
Actinomycetota
Nocardia fluminea DSM 44489 [PJMW]
173306
173232
-
Met
CAT
[ENA]
¡û
>W1810282355
PSYZ01000007
Actinomycetota
Nocardia nova ATCC 10905 [PSYZ]
294469
294395
-
Met
CAT
[ENA]
¡û
>W1810282405
PSZA01000005
Actinomycetota
Nocardia nova MDA5529 [PSZA]
238805
238731
-
Met
CAT
[ENA]
¡û
>W1810282458
PSZB01000009
Actinomycetota
Nocardia nova MDA3397 [PSZB]
123703
123777
+
Met
CAT
[ENA]
¡û
>W1810282519
PSZC01000025
Actinomycetota
Nocardia nova MDA3139 [PSZC]
31089
31015
-
Met
CAT
[ENA]
¡û
>W1810282550
PSZD01000004
Actinomycetota
Nocardia nova BAA2227 [PSZD]
139714
139640
-
Met
CAT
[ENA]
¡û
>W1810282617
PSZE01000023
Actinomycetota
Nocardia nova MDA0897 [PSZE]
31145
31071
-
Met
CAT
[ENA]
¡û
>W1810402909
PYHS01000004
Actinomycetota
Nocardia nova ATCC 33727 [PYHS]
355474
355400
-
Met
CAT
[ENA]
¡û
>W1810402957
PYHT01000005
Actinomycetota
Nocardia sp. MDA0666 [PYHT]
36752
36826
+
Met
CAT
[ENA]
¡û
>W1810608624
QGTL01000011
Actinomycetota
Nocardia neocaledoniensis DSM 44717 [QGTL]
113607
113681
+
Met
CAT
[ENA]
¡û
>W1810760498
QPKD01000204
Actinomycetota
Tsukamurella tyrosinosolvens PW899 [QPKD]
3495
3419
-
Met
CAT
[ENA]
¡û
>W1810763299
QQAZ01000002
Actinomycetota
Nocardia mexicana DSM 44952 [QQAZ]
160228
160152
-
Met
CAT
[ENA]
¡û
>C151013333
CP006850
Actinomycetota
Nocardia nova SH22a [CP006850]
2239582
2239656
+
Met
CAT
[Ensembl]
¡û
>C10113696
CP001966
Actinomycetota
Tsukamurella paurometabola DSM 20162 [CP001966]
2841408
2841334
-
Met
CAT
[Ensembl]
¡û
>C11101257
CP002786
Actinomycetota
Hoyosella subflava DQS3-9A1 [CP002786]
1264488
1264562
+
Met
CAT
[Ensembl]
¡û
>W121126044
BAGL01000127
Actinomycetota
Nocardia transvalensis NBRC 15921 [BAGL]
151036
150960
-
Met
CAT
[ENA]
¡û
>W121125078
BAFT01000028
Actinomycetota
Nocardia brasiliensis NBRC 14402 [BAFT]
33229
33305
+
Met
CAT
[ENA]
¡û
>W1610069040
BCRU01000002
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 = NBRC 103563 [BCRU]
26412
26488
+
Met
CAT
[ENA]
¡û
>W1610078353
BDAV01000006
Actinomycetota
Nocardia africana NBRC 100379 [BDAV]
270711
270785
+
Met
CAT
[ENA]
¡û
>W1610078481
BDAX01000025
Actinomycetota
Nocardia alba NBRC 108234 [BDAX]
170394
170468
+
Met
CAT
[ENA]
¡û
>W1610078784
BDBD01000021
Actinomycetota
Nocardia coubleae NBRC 108252 [BDBD]
113907
113833
-
Met
CAT
[ENA]
¡û
>W1610078826
BDBE01000031
Actinomycetota
Nocardia caishijiensis NBRC 108228 [BDBE]
103181
103107
-
Met
CAT
[ENA]
¡û
>W1610078847
BDBF01000001
Actinomycetota
Nocardia elegans NBRC 108235 [BDBF]
217166
217242
+
Met
CAT
[ENA]
¡û
>W1610078905
BDBG01000003
Actinomycetota
Nocardia salmonicida NBRC 100378 [BDBG]
87616
87542
-
Met
CAT
[ENA]
¡û
>W1610079008
BDBI01000006
Actinomycetota
Nocardia ignorata NBRC 108230 [BDBI]
4936
5010
+
Met
CAT
[ENA]
¡û
>W1610079215
BDBL01000068
Actinomycetota
Nocardia kruczakiae NBRC 101016 [BDBL]
3813
3889
+
Met
CAT
[ENA]
¡û
>W1610079280
BDBN01000037
Actinomycetota
Nocardia nova NBRC 15556 [BDBN]
82083
82007
-
Met
CAT
[ENA]
¡û
>W1610079328
BDBO01000049
Actinomycetota
Nocardia jinanensis NBRC 108249 [BDBO]
106751
106675
-
Met
CAT
[ENA]
¡û
>W1610079441
BDBQ01000063
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
64515
64589
+
Met
CAT
[ENA]
¡û
>W1610079494
BDBR01000029
Actinomycetota
Nocardia salmonicida NBRC 13393 [BDBR]
12160
12086
-
Met
CAT
[ENA]
¡û
>W1610079685
BDBV01000021
Actinomycetota
Nocardia mexicana NBRC 108244 [BDBV]
121118
121194
+
Met
CAT
[ENA]
¡û
>W1610079802
BDBX01000021
Actinomycetota
Nocardia sienata NBRC 100364 [BDBX]
157738
157662
-
Met
CAT
[ENA]
¡û
>W1610079931
BDBZ01000035
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
314091
314165
+
Met
CAT
[ENA]
¡û
>W1610080031
BDCB01000036
Actinomycetota
Nocardia salmonicida NBRC 100376 [BDCB]
107410
107336
-
Met
CAT
[ENA]
¡û
>W1610080060
BDCC01000019
Actinomycetota
Nocardia vaccinii NBRC 15922 [BDCC]
312597
312673
+
Met
CAT
[ENA]
¡û
>W1610080438
BDCI01000060
Actinomycetota
Nocardia vulneris [BDCI]
10813
10737
-
Met
CAT
[ENA]
¡û
>W1610080611
BDCM01000013
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
560572
560646
+
Met
CAT
[ENA]
¡û
>W1610080645
BDCN01000012
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
249002
248926
-
Met
CAT
[ENA]
¡û
>W121124835
BAFO01000012
Actinomycetota
Nocardia asteroides NBRC 15531 [BAFO]
495361
495435
+
Met
CAT
[ENA]
¡û
>W121124935
BAFQ01000062
Actinomycetota
Nocardia aobensis NBRC 100429 [BAFQ]
69042
69118
+
Met
CAT
[ENA]
¡û
>W121125250
BAFW01000388
Actinomycetota
Nocardia cerradoensis NBRC 101014 [BAFW]
53719
53793
+
Met
CAT
[ENA]
¡û
>W121125482
BAGB01000027
Actinomycetota
Nocardia jiangxiensis NBRC 101359 [BAGB]
193111
193187
+
Met
CAT
[ENA]
¡û
>W121125874
BAGI01003825
Actinomycetota
Nocardia terpenica NBRC 100888 [BAGI]
237
313
+
Met
CAT
[ENA]
¡û
>W121125980
BAGK01000184
Actinomycetota
Nocardia thailandica NBRC 100428 [BAGK]
10762
10688
-
Met
CAT
[ENA]
¡û
>W121126070
BAGM01000059
Actinomycetota
Nocardia veterana NBRC 100344 [BAGM]
14137
14211
+
Met
CAT
[ENA]
¡û
>W121126589
BAHC01000084
Actinomycetota
Gordonia rhizosphera NBRC 16068 [BAHC]
44837
44763
-
Met
CAT
[ENA]
¡û
>W121125153
BAFU01000218
Actinomycetota
Nocardia brevicatena NBRC 12119 [BAFU]
3721
3797
+
Met
CAT
[ENA]
¡û
>C131008844
CP003876
Actinomycetota
Nocardia brasiliensis ATCC 700358 HUJEG-1 [CP003876]
2306768
2306844
+
Met
CAT
[Ensembl]
¡û
>W1610503355
FLMU01000015
Actinomycetota
Mycolicibacterium acapulense acapulcensis [FLMU]
47239
47313
+
Met
CAT
[ENA]
¡û
>W1610601084
LFOE01000029
Actinomycetota
Mycolicibacter kumamotonensis kumamotonense [LFOE]
46350
46426
+
Met
CAT
[ENA]
¡û
>W1610725869
LMFE01000010
Actinomycetota
Nocardia sp. Root136 [LMFE]
153789
153715
-
Met
CAT
[ENA]
¡û
>W1610891542
LRRM01000028
Actinomycetota
Nocardia brasiliensis [LRRM]
65698
65622
-
Met
CAT
[ENA]
¡û
>W1610910011
LSFR01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
463586
463662
+
Met
CAT
[ENA]
¡û
>W1610919506
LSRE01000044
Actinomycetota
Tsukamurella pseudospumae [LSRE]
85100
85176
+
Met
CAT
[ENA]
¡û
>W1610919592
LSRG01000013
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
342795
342871
+
Met
CAT
[ENA]
¡û
>W1610919679
LSRI01000001
Actinomycetota
Tsukamurella pulmonis [LSRI]
1028801
1028727
-
Met
CAT
[ENA]
¡û
>W1610919715
LSRJ01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
364169
364245
+
Met
CAT
[ENA]
¡û
>W1610986466
LWGR01000008
Actinomycetota
Nocardia terpenica [LWGR]
68459
68383
-
Met
CAT
[ENA]
¡û
>W1611035857
LZIG01000052
Actinomycetota
Mycobacterium sp. 852002-51759_SCH5129042 [LZIG]
116728
116804
+
Met
CAT
[ENA]
¡û
>W1611038347
LZKG01000085
Actinomycetota
Mycolicibacter sinensis sinense [LZKG]
34812
34736
-
Met
CAT
[ENA]
¡û
>W1611039476
LZLE01000029
Actinomycetota
Mycobacterium sp. 1423905.2 [LZLE]
11471
11395
-
Met
CAT
[ENA]
¡û
>W1611040766
LZMF01000059
Actinomycetota
Mycolicibacter sinensis sinense [LZMF]
18466
18542
+
Met
CAT
[ENA]
¡û
>W1611041012
LZMK01000220
Actinomycetota
Nocardia sp. 852002-20019_SCH5090214 [LZMK]
8533
8457
-
Met
CAT
[ENA]
¡û
>W1611041076
LZML01000211
Actinomycetota
Nocardia sp. 852002-51101_SCH5132738 [LZML]
100034
100110
+
Met
CAT
[ENA]
¡û
>W1611043410
LZSP01000089
Actinomycetota
Nocardia sp. 852002-51244_SCH5132740 [LZSP]
8014
7938
-
Met
CAT
[ENA]
¡û
>W1710066413
BCRU01000002
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 = NBRC 103563 [BCRU]
26412
26488
+
Met
CAT
[ENA]
¡û
>W1710076912
BDAV01000006
Actinomycetota
Nocardia africana NBRC 100379 [BDAV]
270711
270785
+
Met
CAT
[ENA]
¡û
>W1710077040
BDAX01000025
Actinomycetota
Nocardia alba NBRC 108234 [BDAX]
170394
170468
+
Met
CAT
[ENA]
¡û
>W1710077343
BDBD01000021
Actinomycetota
Nocardia coubleae NBRC 108252 [BDBD]
113907
113833
-
Met
CAT
[ENA]
¡û
>W1710077385
BDBE01000031
Actinomycetota
Nocardia caishijiensis NBRC 108228 [BDBE]
103181
103107
-
Met
CAT
[ENA]
¡û
>W1710077406
BDBF01000001
Actinomycetota
Nocardia elegans NBRC 108235 [BDBF]
217166
217242
+
Met
CAT
[ENA]
¡û
>W1710077464
BDBG01000003
Actinomycetota
Nocardia salmonicida NBRC 100378 [BDBG]
87616
87542
-
Met
CAT
[ENA]
¡û
>W1710077567
BDBI01000006
Actinomycetota
Nocardia ignorata NBRC 108230 [BDBI]
4936
5010
+
Met
CAT
[ENA]
¡û
>W1710077774
BDBL01000068
Actinomycetota
Nocardia kruczakiae NBRC 101016 [BDBL]
3813
3889
+
Met
CAT
[ENA]
¡û
>W1710077839
BDBN01000037
Actinomycetota
Nocardia nova NBRC 15556 [BDBN]
82083
82007
-
Met
CAT
[ENA]
¡û
>W1710077887
BDBO01000049
Actinomycetota
Nocardia jinanensis NBRC 108249 [BDBO]
106751
106675
-
Met
CAT
[ENA]
¡û
>W1710078000
BDBQ01000063
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
64515
64589
+
Met
CAT
[ENA]
¡û
>W1710078053
BDBR01000029
Actinomycetota
Nocardia salmonicida NBRC 13393 [BDBR]
12160
12086
-
Met
CAT
[ENA]
¡û
>W1710078244
BDBV01000021
Actinomycetota
Nocardia mexicana NBRC 108244 [BDBV]
121118
121194
+
Met
CAT
[ENA]
¡û
>W1710078361
BDBX01000021
Actinomycetota
Nocardia sienata NBRC 100364 [BDBX]
157738
157662
-
Met
CAT
[ENA]
¡û
>W1710078490
BDBZ01000035
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
314091
314165
+
Met
CAT
[ENA]
¡û
>W1710078590
BDCB01000036
Actinomycetota
Nocardia salmonicida NBRC 100376 [BDCB]
107410
107336
-
Met
CAT
[ENA]
¡û
>W1710078619
BDCC01000019
Actinomycetota
Nocardia vaccinii NBRC 15922 [BDCC]
312597
312673
+
Met
CAT
[ENA]
¡û
>W1710078997
BDCI01000060
Actinomycetota
Nocardia vulneris [BDCI]
10813
10737
-
Met
CAT
[ENA]
¡û
>W1710079170
BDCM01000013
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
560572
560646
+
Met
CAT
[ENA]
¡û
>W1710079204
BDCN01000012
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
249002
248926
-
Met
CAT
[ENA]
¡û
>W1710496435
FLMU01000015
Actinomycetota
Mycolicibacterium acapulense acapulcensis [FLMU]
47239
47313
+
Met
CAT
[ENA]
¡û
>W1710534689
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
3508212
3508288
+
Met
CAT
[ENA]
¡û
>W1710568874
FOTX01000004
Actinomycetota
Nocardia asteroides [FOTX]
440342
440416
+
Met
CAT
[ENA]
¡û
>W1710722600
LFOE01000029
Actinomycetota
Mycolicibacter kumamotonensis kumamotonense [LFOE]
46350
46426
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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