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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152046 (27 seq.)
>W131145965
AQGL01000005
Actinomycetota
Bifidobacterium longum D2957 [AQGL]
32667
32589
-
Lys
TTT
[ENA]
¡û
>WENV181217001
OFCH01000019
[OFCH] metagenome; Human gut stool
52683
52607
-
Lys
TTT
[ENA]
¢þ
>WENV181220083
OFCQ01000055
[OFCQ] metagenome; Human gut stool
83904
83828
-
Lys
TTT
[ENA]
¢þ
>WENV181225721
OFDJ01000053
[OFDJ] metagenome; Human gut stool
61642
61566
-
Lys
TTT
[ENA]
¢þ
>W141524339
JGYZ01000003
Actinomycetota
Bifidobacterium longum subsp. longum [JGYZ]
164588
164510
-
Lys
TTT
[ENA]
¡û
>C191208469
LR134354
Actinomycetota
Bifidobacterium longum subsp. infantis NCTC11817 [LR134354]
1464633
1464709
+
Lys
TTT
-
¡û
>C191209153
LR134369
Actinomycetota
Bifidobacterium longum NCTC11818 [LR134369]
1124174
1124098
-
Lys
TTT
-
¡û
>W1910343131
FTRM01000010
Actinomycetota
Bifidobacterium longum [FTRM]
39608
39684
+
Lys
TTT
[ENA]
¡û
>W1910343220
FTRN01000031
Actinomycetota
Bifidobacterium longum [FTRN]
18351
18275
-
Lys
TTT
[ENA]
¡û
>W1910343434
FTRR01000017
Actinomycetota
Bifidobacterium longum [FTRR]
20783
20707
-
Lys
TTT
[ENA]
¡û
>C09102380
CP001095
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [CP001095]
1464838
1464916
+
Lys
TTT
-
¡û
>W1810813781
QRZU01000014
Actinomycetota
Bifidobacterium longum AF13-41 [QRZU]
32703
32627
-
Lys
TTT
[ENA]
¡û
>W1810814000
QRZY01000015
Actinomycetota
Bifidobacterium longum AF13-34 [QRZY]
1870
1946
+
Lys
TTT
[ENA]
¡û
>W1810815799
QSBG01000007
Actinomycetota
Bifidobacterium longum AF05-16 [QSBG]
34811
34887
+
Lys
TTT
[ENA]
¡û
>W1510059597
CCWN01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1206122787 [CCWN]
4684
4762
+
Lys
TTT
[ENA]
¡û
>W1510059663
CCWO01000034
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1307292462 [CCWO]
4813
4891
+
Lys
TTT
[ENA]
¡û
>W1510059730
CCWP01000029
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401111250 [CCWP]
4135
4213
+
Lys
TTT
[ENA]
¡û
>W1510059797
CCWQ01000023
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621b [CCWQ]
4812
4890
+
Lys
TTT
[ENA]
¡û
>W1510059863
CCWR01000018
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845a [CCWR]
39560
39638
+
Lys
TTT
[ENA]
¡û
>W1510059930
CCWS01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621a [CCWS]
39588
39666
+
Lys
TTT
[ENA]
¡û
>W1510059997
CCWT01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845b [CCWT]
39584
39662
+
Lys
TTT
[ENA]
¡û
>W1510060064
CCWU01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401242951 [CCWU]
39556
39634
+
Lys
TTT
[ENA]
¡û
>C11103159
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1464629
1464707
+
Lys
TTT
-
¡û
>C11103226
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1464629
1464707
+
Lys
TTT
-
¡û
>C11103464
AP010888
Actinomycetota
Bifidobacterium longum subsp. longum JCM 1217 [AP010888]
1124174
1124096
-
Lys
TTT
[Ensembl]
¡û
>W1610518906
JDTT01000026
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM DSM 20088 [JDTT]
46545
46467
-
Lys
TTT
[ENA]
¡û
>W1710534453
FNRW01000002
Actinomycetota
Bifidobacterium longum [FNRW]
603483
603405
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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