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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152063 (48 seq.)
>W131239720
BANX01000029
Actinomycetota
Gordonia soli NBRC 108243 [BANX]
25521
25597
+
Leu
CAA
[ENA]
¡û
>C005569
BA000035
Actinomycetota
Corynebacterium efficiens YS-314 [BA000035]
1521953
1521877
-
Leu
CAA
[Ensembl]
¡û
>WENV180711558
ODFP01001237
[ODFP] human metagenome; G_DNA_Anterior nares
20
94
+
Leu
CAA
[ENA]
¢þ
>WENV180711976
ODFR01008226
[ODFR] human metagenome; G_DNA_R_Retroauricular crease
395
321
-
Leu
CAA
[ENA]
¢þ
>WENV180745529
ODHL01000011
[ODHL] human metagenome; G_DNA_L_Retroauricular crease
248682
248608
-
Leu
CAA
[ENA]
¢þ
>WENV180749651
ODHQ01010580
[ODHQ] human metagenome; G_DNA_Anterior nares
125
51
-
Leu
CAA
[ENA]
¢þ
>WENV180749703
ODHR01001030
[ODHR] human metagenome; G_DNA_Anterior nares
212
286
+
Leu
CAA
[ENA]
¢þ
>WENV180765722
ODIC01058581
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
134
208
+
Leu
CAA
[ENA]
¢þ
>WENV180855642
ODKY01000612
[ODKY] human metagenome; G_DNA_R_Retroauricular crease
294
220
-
Leu
CAA
[ENA]
¢þ
>WENV180878607
ODLX01000653
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
963
889
-
Leu
CAA
[ENA]
¢þ
>WENV180878754
ODLY01000006
[ODLY] human metagenome; G_DNA_Anterior nares
23024
23098
+
Leu
CAA
[ENA]
¢þ
>WENV180912880
ODSO01003816
[ODSO] human metagenome; G_DNA_Anterior nares
192
118
-
Leu
CAA
[ENA]
¢þ
>WENV180914917
ODTA01000282
[ODTA] human metagenome; G_DNA_Anterior nares
406
332
-
Leu
CAA
[ENA]
¢þ
>WENV180918003
ODTF01000015
[ODTF] human metagenome; G_DNA_Anterior nares
36649
36723
+
Leu
CAA
[ENA]
¢þ
>WENV180937511
ODTW01003231
[ODTW] human metagenome; G_DNA_Anterior nares
386
460
+
Leu
CAA
[ENA]
¢þ
>WENV180940232
ODTY01001297
[ODTY] human metagenome; G_DNA_Anterior nares
582
508
-
Leu
CAA
[ENA]
¢þ
>WENV180966766
ODUR01006244
[ODUR] human metagenome; G_DNA_Anterior nares
400
474
+
Leu
CAA
[ENA]
¢þ
>WENV180966939
ODUS01000375
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
3967
4041
+
Leu
CAA
[ENA]
¢þ
>WENV180972469
ODUV01001143
[ODUV] human metagenome; G_DNA_Anterior nares
1389
1315
-
Leu
CAA
[ENA]
¢þ
>WENV180979017
ODVB01000369
[ODVB] human metagenome; G_DNA_Anterior nares
345
271
-
Leu
CAA
[ENA]
¢þ
>WENV180984523
ODVH01000028
[ODVH] human metagenome; G_DNA_Anterior nares
897
971
+
Leu
CAA
[ENA]
¢þ
>WENV181007035
ODWC01009070
[ODWC] human metagenome; G_DNA_L_Retroauricular crease
260
334
+
Leu
CAA
[ENA]
¢þ
>WENV181010009
ODWG01000012
[ODWG] human metagenome; G_DNA_Anterior nares
14900
14826
-
Leu
CAA
[ENA]
¢þ
>WENV181024977
ODWY01000008
[ODWY] human metagenome; G_DNA_Anterior nares
44743
44669
-
Leu
CAA
[ENA]
¢þ
>WENV181032347
ODXM01000646
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
655
581
-
Leu
CAA
[ENA]
¢þ
>WENV181040394
ODXR01007254
[ODXR] human metagenome; G_DNA_Anterior nares
313
239
-
Leu
CAA
[ENA]
¢þ
>WENV181042322
ODXT01011699
[ODXT] human metagenome; G_DNA_R_Retroauricular crease
102
28
-
Leu
CAA
[ENA]
¢þ
>WENV181115898
OEES01004937
[OEES] human metagenome; G_DNA_Anterior nares
93
19
-
Leu
CAA
[ENA]
¢þ
>WENV181119582
OEFI01000536
[OEFI] human metagenome; G_DNA_Anterior nares
465
539
+
Leu
CAA
[ENA]
¢þ
>WENV181123320
OEFP01000010
[OEFP] human metagenome; G_DNA_R_Retroauricular crease
164763
164689
-
Leu
CAA
[ENA]
¢þ
>WENV181124334
OEFR01000021
[OEFR] human metagenome; G_DNA_Anterior nares
6407
6333
-
Leu
CAA
[ENA]
¢þ
>WENV181130955
OEFZ01000004
[OEFZ] human metagenome; G_DNA_Anterior nares
36498
36572
+
Leu
CAA
[ENA]
¢þ
>WENV181131070
OEFZ01001597
[OEFZ] human metagenome; G_DNA_Anterior nares
389
315
-
Leu
CAA
[ENA]
¢þ
>WENV181131760
OEGD01020504
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
414
488
+
Leu
CAA
[ENA]
¢þ
>WENV181371547
OFQV01016193
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
378
452
+
Leu
CAA
[ENA]
¢þ
>WENV182629806
OJKV01000007
[OJKV] metagenome; surface
19185
19259
+
Leu
CAA
[ENA]
¢þ
>WENV182641260
OJLG01000003
[OJLG] metagenome; surface
32318
32392
+
Leu
CAA
[ENA]
¢þ
>WENV182641568
OJLI01001369
[OJLI] metagenome; surface
734
660
-
Leu
CAA
[ENA]
¢þ
>WENV182641646
OJLJ01000095
[OJLJ] metagenome; surface
10852
10926
+
Leu
CAA
[ENA]
¢þ
>C141002629
CP003924
Actinomycetota
Corynebacterium maris DSM 45190 [CP003924]
1339113
1339037
-
Leu
CAA
[Ensembl]
¡û
>SRA1001835
SRR001308.81349
Metagenomic characterization of a wastewater treatment plant (SRP000180)
253
177
-
Leu
CAA
[SRA]
>C151048669
CP009312
Actinomycetota
Lawsonella clevelandensis X1036 [CP009312]
1793994
1793920
-
Leu
CAA
-
¡û
>C151084467
CP011545
Actinomycetota
Corynebacterium testudinoris DSM 44614 [CP011545]
1216044
1215968
-
Leu
CAA
[Ensembl]
¡û
>C151094702
CP012390
Actinomycetota
Lawsonella clevelandensis X1698 [CP012390]
1848595
1848521
-
Leu
CAA
-
¡û
>C11101276
CP002786
Actinomycetota
Hoyosella subflava DQS3-9A1 [CP002786]
1527196
1527120
-
Leu
CAA
[Ensembl]
¡û
>W121126597
BAHC01000164
Actinomycetota
Gordonia rhizosphera NBRC 16068 [BAHC]
16012
16088
+
Leu
CAA
[ENA]
¡û
>W1610081252
BDDI01000014
Actinomycetota
Hoyosella altamirensis [BDDI]
110349
110273
-
Leu
CAA
[ENA]
¡û
>W1710079903
BDDI01000014
Actinomycetota
Hoyosella altamirensis [BDDI]
110349
110273
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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