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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152112 (86 seq.)
>A171001139
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
3690185
3690110
-
Cys
GCA
-
¡û
>A171001319
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
1680743
1680668
-
Cys
GCA
-
¡û
>A171002457
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
2732595
2732670
+
Cys
GCA
-
¡û
>A171002694
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
203539
203614
+
Cys
GCA
-
¡û
>A171003037
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
230130
230206
+
Cys
GCA
-
¡û
>A171003179
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
2539283
2539207
-
Cys
GCA
-
¡û
>A171003492
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
2432858
2432782
-
Cys
GCA
-
¡û
>A171004148
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
2551348
2551273
-
Cys
GCA
-
¡û
>A171006164
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
1971038
1970963
-
Cys
GCA
-
¡û
>A171006972
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2663566
2663491
-
Cys
GCA
-
¡û
>A171007004
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
1876824
1876899
+
Cys
GCA
-
¡û
>WENV170679709
LFCJ01000179
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
230
308
+
Cys
GCA
[ENA]
¢þ
>WENV170679844
LFCJ01000861
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
260
335
+
Cys
GCA
[ENA]
¢þ
>WENV170701976
LKMJ01000195
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2996
3071
+
Cys
GCA
[ENA]
¢þ
>WENV170704089
LKMJ01022391
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
240
315
+
Cys
GCA
[ENA]
¢þ
>W1910006881
BBMO01000002
Euryarchaeota
Halapricum salinum CBA1105 [BBMO]
1135829
1135754
-
Cys
GCA
[ENA]
¡û
>W1910226679
FMZP01000003
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
503
578
+
Cys
GCA
[ENA]
¡û
>W1910226934
FNFE01000007
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
292983
292908
-
Cys
GCA
[ENA]
¡û
>W1910227076
FNKQ01000001
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
328
403
+
Cys
GCA
[ENA]
¡û
>W1910229624
FOAD01000003
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
389565
389490
-
Cys
GCA
[ENA]
¡û
>W1910229818
FOFD01000004
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
680106
680031
-
Cys
GCA
[ENA]
¡û
>W1910229888
FOIC01000003
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
282096
282021
-
Cys
GCA
[ENA]
¡û
>W1910229945
FOIS01000003
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
878135
878060
-
Cys
GCA
[ENA]
¡û
>W1910230277
FOKW01000016
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
583
658
+
Cys
GCA
[ENA]
¡û
>W1910230825
FOZK01000006
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
582
657
+
Cys
GCA
[ENA]
¡û
>W1910230847
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
599
674
+
Cys
GCA
[ENA]
¡û
>W1910282470
FRAN01000003
Euryarchaeota
Haladaptatus paucihalophilus DX253 [FRAN]
528179
528104
-
Cys
GCA
[ENA]
¡û
>W1910340443
FTNO01000001
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
2196
2271
+
Cys
GCA
[ENA]
¡û
>W1910568512
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
158
233
+
Cys
GCA
[ENA]
¡û
>W1910568554
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
1948965
1948890
-
Cys
GCA
[ENA]
¡û
>W1910569082
JHUT02000009
Euryarchaeota
Natrinema mahii H13 [JHUT]
135672
135597
-
Cys
GCA
[ENA]
¡û
>W1910572696
JNCS01000001
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
837490
837415
-
Cys
GCA
[ENA]
¡û
>W1910583022
JXAN01000077
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
67
142
+
Cys
GCA
[ENA]
¡û
>W1910646105
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
15465
15540
+
Cys
GCA
[ENA]
¡û
>W1910657557
MASN01000024
Euryarchaeota
Natrialba sp. SSL1 [MASN]
131
206
+
Cys
GCA
[ENA]
¡û
>W1910696284
MEIH01000165
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
5236
5161
-
Cys
GCA
[ENA]
¡û
>W1910696300
MEIH01000353
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
2590
2515
-
Cys
GCA
[ENA]
¡û
>W1910826100
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
1261016
1260941
-
Cys
GCA
[ENA]
¡û
>W1911433995
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2735523
2735448
-
Cys
GCA
[ENA]
¡û
>W1911572215
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
1763636
1763711
+
Cys
GCA
[ENA]
¡û
>W1911580789
PEND01000001
Euryarchaeota
Halegenticoccus soli SYSU A9-0 [PEND]
803
879
+
Cys
GCA
[ENA]
¡û
>W1911693751
QLVG01000041
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
33008
32933
-
Cys
GCA
[ENA]
¡û
>W1911696845
QNGA01000012
Euryarchaeota
halophilic archaeon H22 [QNGA]
227
302
+
Cys
GCA
[ENA]
¡û
>W1911717782
QQRR01000002
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
231
306
+
Cys
GCA
[ENA]
¡û
>W1911717820
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
1889123
1889198
+
Cys
GCA
[ENA]
¡û
>W1911717977
QQTY01000001
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
1260191
1260116
-
Cys
GCA
[ENA]
¡û
>W1911749401
QWGG01000002
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
623334
623410
+
Cys
GCA
[ENA]
¡û
>W1610001046
ACIT01000002
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
35603
35678
+
Cys
GCA
[ENA]
¡û
>W1610002980
AEMG01000009
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
447618
447543
-
Cys
GCA
[ENA]
¡û
>W1610004035
AGFZ01000001
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
28436
28361
-
Cys
GCA
[ENA]
¡û
>W1610004127
AGIN01000004
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
278
354
+
Cys
GCA
[ENA]
¡û
>W1610011743
AOHS01000064
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
13076
13001
-
Cys
GCA
[ENA]
¡û
>W1610011957
AOHX01000037
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
175
250
+
Cys
GCA
[ENA]
¡û
>W1610012000
AOHY01000025
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
163
238
+
Cys
GCA
[ENA]
¡û
>W1610012048
AOHZ01000059
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
190
266
+
Cys
GCA
[ENA]
¡û
>W1610012069
AOIA01000026
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
19936
19861
-
Cys
GCA
[ENA]
¡û
>W1610012163
AOIC01000047
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
13268
13193
-
Cys
GCA
[ENA]
¡û
>W1610012244
AOIE01000032
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
19607
19531
-
Cys
GCA
[ENA]
¡û
>W1610012445
AOIL01000055
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
320
395
+
Cys
GCA
[ENA]
¡û
>W1610012506
AOIN01000040
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
604
679
+
Cys
GCA
[ENA]
¡û
>W1610012538
AOIO01000011
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
198
276
+
Cys
GCA
[ENA]
¡û
>W1610012580
AOIP01000003
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
166
241
+
Cys
GCA
[ENA]
¡û
>W1610012642
AOIQ01000016
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
21187
21263
+
Cys
GCA
[ENA]
¡û
>W1610012663
AOIR01000005
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
200499
200424
-
Cys
GCA
[ENA]
¡û
>W1610012721
AOIS01000022
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
194
269
+
Cys
GCA
[ENA]
¡û
>W1610012772
AOIT01000024
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
224
299
+
Cys
GCA
[ENA]
¡û
>W1610012798
AOIU01000005
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
183341
183266
-
Cys
GCA
[ENA]
¡û
>W1610013709
AOLI01000013
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
3426
3501
+
Cys
GCA
[ENA]
¡û
>W1610013851
AOLK01000024
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
202780
202705
-
Cys
GCA
[ENA]
¡û
>W1610014004
AOLN01000020
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
23046
22971
-
Cys
GCA
[ENA]
¡û
>W1610014234
AOLS01000067
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
121268
121193
-
Cys
GCA
[ENA]
¡û
>W1610018843
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
2133912
2133987
+
Cys
GCA
[ENA]
¡û
>W1610018966
AQZY01000004
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
369366
369291
-
Cys
GCA
[ENA]
¡û
>W1610024345
ATYM01000001
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
169
245
+
Cys
GCA
[ENA]
¡û
>W1610041358
BANO01000331
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 [BANO]
1756
1680
-
Cys
GCA
[ENA]
¡û
>W1610041531
BATA01000016
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 JCM 16109 [BATA]
3925
4001
+
Cys
GCA
[ENA]
¡û
>W1610046863
BBCV01000041
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
35108
35033
-
Cys
GCA
[ENA]
¡û
>W1610082974
CBMA010000021
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
18072
17997
-
Cys
GCA
[ENA]
¡û
>W1610083033
CBMB010000005
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
320622
320547
-
Cys
GCA
[ENA]
¡û
>W1610085134
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
156342
156267
-
Cys
GCA
[ENA]
¡û
>W1610085235
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
2360622
2360697
+
Cys
GCA
[ENA]
¡û
>W1610085317
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
2317226
2317301
+
Cys
GCA
[ENA]
¡û
>W1610671387
LKCV01000180
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
307
383
+
Cys
GCA
[ENA]
¡û
>W1610682128
LKMK01000026
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
260
335
+
Cys
GCA
[ENA]
¡û
>W1610799798
LOPU01000028
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
123
198
+
Cys
GCA
[ENA]
¡û
>W1610986940
LWHG01000021
Euryarchaeota
Haladaptatus sp. R4 [LWHG]
1049792
1049717
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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