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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152184 (57 seq.)
>W1710805144
LJZT01000151
Cyanobacteriota
Phormidium sp. OSCR [LJZT]
4585
4658
+
Val
GAC
[ENA]
¡û
>W131035982
AJUB01000004
Cyanobacteriota
Leptolyngbyaceae cyanobacterium JSC-12 JSC-12 [AJUB]
17026
16951
-
Val
GAC
[ENA]
¡û
>W1711088521
LSYZ01000087
Cyanobacteriota
Leptolyngbya valderiana BDU 20041 [LSYZ]
20671
20744
+
Val
GAC
[ENA]
¡û
>W1711088570
LSZA01000015
Cyanobacteriota
Phormidium willei BDU 130791 [LSZA]
23786
23713
-
Val
GAC
[ENA]
¡û
>W1711190047
LWRO01000017
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
68885
68959
+
Val
GAC
[ENA]
¡û
>W1711509524
MKZR01000001
Cyanobacteriota
Moorena producens NAK12DEC93-3La [MKZR]
5680319
5680394
+
Val
GAC
[ENA]
¡û
>W1711509575
MKZS01000001
Cyanobacteriota
Moorena bouillonii PNG5-198 [MKZS]
5750353
5750428
+
Val
GAC
[ENA]
¡û
>W1711584860
MNYZ01000059
Cyanobacteriota
Oscillatoriales cyanobacterium CG2_30_40_61 [MNYZ]
19416
19489
+
Val
GAC
[ENA]
¡û
>W1711662061
MQTZ01000049
Cyanobacteriota
Leptolyngbya sp. 'hensonii' 'hensonii' [MQTZ]
31063
30990
-
Val
GAC
[ENA]
¡û
>C171064206
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
6764823
6764898
+
Val
GAC
-
¡û
>W131058614
ANFQ01000190
Cyanobacteriota
Baaleninema simplex PCC 7105 [ANFQ]
8796
8869
+
Val
GAC
[ENA]
¡û
>W131063257
ANKO01000041
Cyanobacteriota
Oscillatoria sp. PCC 10802 [ANKO]
28233
28306
+
Val
GAC
[ENA]
¡û
>C025534
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
1127199
1127126
-
Val
GAC
[Ensembl]
¡û
>WENV180013245
FMSI01059232
[FMSI] soil metagenome; Soil
5434
5361
-
Val
GAC
[ENA]
¢þ
>W141038672
ALWB01000119
Cyanobacteriota
Pseudanabaena biceps PCC 7429 [ALWB]
9255
9182
-
Val
GAC
[ENA]
¡û
>W141038694
ALWC01000001
Cyanobacteriota
Synechococcus sp. PCC 7336 [ALWC]
658517
658592
+
Val
GAC
[ENA]
¡û
>W141067383
ASAK01000002
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 126/8 [ASAK]
35636
35709
+
Val
GAC
[ENA]
¡û
>W141096702
AVFS01000033
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 15 [AVFS]
14952
14879
-
Val
GAC
[ENA]
¡û
>W141096743
AVFT01000034
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 34 [AVFT]
34449
34522
+
Val
GAC
[ENA]
¡û
>W141096778
AVFU01000061
Cyanobacteriota
Planktothrix mougeotii NIVA-CYA 405 [AVFU]
20721
20794
+
Val
GAC
[ENA]
¡û
>W141096818
AVFV01000106
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 406 [AVFV]
21167
21240
+
Val
GAC
[ENA]
¡û
>W141096870
AVFW01000152
Cyanobacteriota
Planktothrix rubescens NIVA-CYA 407 [AVFW]
84587
84514
-
Val
GAC
[ENA]
¡û
>W141096886
AVFX01000038
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 540 [AVFX]
34448
34521
+
Val
GAC
[ENA]
¡û
>W141096929
AVFY01000060
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 56/3 [AVFY]
114518
114591
+
Val
GAC
[ENA]
¡û
>W141096963
AVFZ01000106
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 98 [AVFZ]
13146
13073
-
Val
GAC
[ENA]
¡û
>WENV181234673
OFEU01001195
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
4551
4624
+
Val
GAC
[ENA]
¢þ
>WENV181411383
OGCI01023458
[OGCI] hot springs metagenome; Hot spring water
1551
1478
-
Val
GAC
[ENA]
¢þ
>WENV181414577
OGCL01000699
[OGCL] hot springs metagenome; Hot spring water
32672
32745
+
Val
GAC
[ENA]
¢þ
>WENV181416892
OGCL01175440
[OGCL] hot springs metagenome; Hot spring water
341
268
-
Val
GAC
[ENA]
¢þ
>W08010768
ABRS01000028
Cyanobacteriota
Coleofasciculus chthonoplastes PCC 7420 [ABRS]
9139
9212
+
Val
GAC
[ENA]
¡û
>WENV170019178
BBPD01005368
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
4926
4999
+
Val
GAC
[ENA]
¢þ
>WENV170020556
BBPE01011606
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
4922
4849
-
Val
GAC
[ENA]
¢þ
>C181030460
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
143537
143610
+
Val
GAC
-
¡û
>C191000794
AP017991
Cyanobacteriota
Planktothrix agardhii NIES-204 [AP017991]
2901086
2901159
+
Val
GAC
-
¡û
>C191001201
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
656982
657055
+
Val
GAC
-
¡û
>C191085208
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
173746
173819
+
Val
GAC
-
¡û
>W1910175465
BJCD01000030
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A [BJCD]
147087
147160
+
Val
GAC
[ENA]
¡û
>W1910194131
CZCS01000004
Cyanobacteriota
Planktothrix paucivesiculata PCC 9631 [CZCS]
31126
31053
-
Val
GAC
[ENA]
¡û
>W1910194201
CZCT02000106
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
29225
29152
-
Val
GAC
[ENA]
¡û
>W1910194290
CZCZ01000006
Cyanobacteriota
Planktothrix rubescens 7821 [CZCZ]
462386
462313
-
Val
GAC
[ENA]
¡û
>W1910194336
CZDF01000172
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
356350
356423
+
Val
GAC
[ENA]
¡û
>W1910339357
FSSI01000011
Cyanobacteriota
Phormidium lacuna HE10JO [FSSI]
36730
36803
+
Val
GAC
[ENA]
¡û
>W1910339404
FSSI02000011
Cyanobacteriota
Phormidium lacuna HE10JO [FSSI]
36730
36803
+
Val
GAC
[ENA]
¡û
>C141007925
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
353159
353232
+
Val
GAC
-
¡û
>W1911204864
NRIU01001753
Cyanobacteriota
Geitlerinema sp. FC II [NRIU]
47581
47654
+
Val
GAC
[ENA]
¡û
>W11143156
AEPQ01000147
Cyanobacteriota
Moorena producens 3L [AEPQ]
6026
6101
+
Val
GAC
[ENA]
¡û
>C161002794
AP017367
Cyanobacteriota
Leptolyngbya sp. O-77 [AP017367]
3381521
3381448
-
Val
GAC
[Ensembl]
¡û
>C131004331
CP003558
Cyanobacteriota
Synechococcus sp. PCC 6312 [CP003558]
906382
906307
-
Val
GAC
[Ensembl]
¡û
>C131004439
CP003592
Cyanobacteriota
Pseudanabaena sp. PCC 7367 [CP003592]
4191931
4191856
-
Val
GAC
[Ensembl]
¡û
>C131004415
CP003591
Cyanobacteriota
Geitlerinema sp. PCC 7407 [CP003591]
766441
766368
-
Val
GAC
[Ensembl]
¡û
>C131004638
CP003607
Cyanobacteriota
Oscillatoria acuminata PCC 6304 [CP003607]
2166026
2166099
+
Val
GAC
[Ensembl]
¡û
>W1610634132
LIRE01000196
Cyanobacteriota
Pseudanabaena sp. 'Roaring Creek' [LIRE]
411
484
+
Val
GAC
[ENA]
¡û
>W1610669001
LJZT01000151
Cyanobacteriota
Phormidium sp. OSCR [LJZT]
4585
4658
+
Val
GAC
[ENA]
¡û
>W1610923060
LSYZ01000087
Cyanobacteriota
Leptolyngbya valderiana BDU 20041 [LSYZ]
20671
20744
+
Val
GAC
[ENA]
¡û
>W1610923109
LSZA01000015
Cyanobacteriota
Phormidium willei BDU 130791 [LSZA]
23786
23713
-
Val
GAC
[ENA]
¡û
>W1610992166
LWRO01000017
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
68885
68959
+
Val
GAC
[ENA]
¡û
>W1710768509
LIRE01000196
Cyanobacteriota
Pseudanabaena sp. 'Roaring Creek' [LIRE]
411
484
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK