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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152215 (122 seq.)
>W1710799967
LJVH01000016
Actinomycetota
Corynebacterium ulcerans [LJVH]
196175
196251
+
Met
CAT
[ENA]
¡û
>W1711345658
MCNY01000002
Actinomycetota
Corynebacterium pseudotuberculosis [MCNY]
768061
767985
-
Met
CAT
[ENA]
¡û
>W1711345843
MCOC01000003
Actinomycetota
Corynebacterium pseudotuberculosis [MCOC]
595518
595594
+
Met
CAT
[ENA]
¡û
>W1712009544
NEKB01000009
Actinomycetota
Alloscardovia macacae [NEKB]
24742
24818
+
Met
CAT
[ENA]
¡û
>W1712009574
NEKC01000003
Actinomycetota
Alloscardovia macacae [NEKC]
72779
72703
-
Met
CAT
[ENA]
¡û
>W131232767
AUJM01000017
Actinomycetota
Bifidobacterium sp. AGR2158 [AUJM]
58736
58662
-
Met
CAT
[ENA]
¡û
>W131165339
ARBM01000003
Actinomycetota
Corynebacterium caspium DSM 44850 [ARBM]
318685
318761
+
Met
CAT
[ENA]
¡û
>C171036303
CP015183
Actinomycetota
Corynebacterium pseudotuberculosis 32 [CP015183]
640222
640298
+
Met
CAT
-
¡û
>C171036594
CP015189
Actinomycetota
Corynebacterium pseudotuberculosis 43 [CP015189]
603561
603637
+
Met
CAT
-
¡û
>C171036736
CP015192
Actinomycetota
Corynebacterium pseudotuberculosis 34 [CP015192]
640264
640340
+
Met
CAT
-
¡û
>WENV180146210
OAUF01000028
[OAUF] human gut metagenome; faeces
88794
88718
-
fMet
CAT
[ENA]
¢þ
>WENV180181139
OAWM01000621
[OAWM] human gut metagenome; faeces
3883
3807
-
fMet
CAT
[ENA]
¢þ
>WENV180183563
OAWQ01000006
[OAWQ] human gut metagenome; faeces
246522
246598
+
fMet
CAT
[ENA]
¢þ
>WENV180292452
OBIV01452553
[OBIV] soil metagenome; Clay
273
347
+
fMet
CAT
[ENA]
¢þ
>WENV180392967
OBPP01034773
[OBPP] marine metagenome; ENVO:00002042
467
393
-
fMet
CAT
[ENA]
¢þ
>WENV180393777
OBPR01007501
[OBPR] marine metagenome; ENVO:00002042
239
315
+
fMet
CAT
[ENA]
¢þ
>WENV180393795
OBPR01009910
[OBPR] marine metagenome; ENVO:00002042
384
460
+
fMet
CAT
[ENA]
¢þ
>WENV180410112
OBUW01001474
[OBUW] human gut metagenome; faeces
1029
953
-
fMet
CAT
[ENA]
¢þ
>WENV180455419
OBXO01002991
[OBXO] human gut metagenome; faeces
1009
933
-
fMet
CAT
[ENA]
¢þ
>WENV180459645
OBXX01001564
[OBXX] human gut metagenome; faeces
3208
3284
+
fMet
CAT
[ENA]
¢þ
>WENV180504652
OCAN01023390
[OCAN] human gut metagenome; faeces
615
541
-
fMet
CAT
[ENA]
¢þ
>WENV180944673
ODUC01028195
[ODUC] human metagenome; G_DNA_Supragingival plaque
760
684
-
fMet
CAT
[ENA]
¢þ
>WENV181328014
OFLS01000062
[OFLS] metagenome; faeces
69102
69178
+
fMet
CAT
[ENA]
¢þ
>WENV181367587
OFQC01000006
[OFQC] freshwater metagenome; Freshwater Lake
26015
26091
+
fMet
CAT
[ENA]
¢þ
>WENV181369119
OFQO01000986
[OFQO] freshwater metagenome; Freshwater Lake
767
843
+
fMet
CAT
[ENA]
¢þ
>WENV181376732
OFRA01000008
[OFRA] wastewater metagenome; Lake Maggiore Verbania
28511
28587
+
fMet
CAT
[ENA]
¢þ
>WENV181376771
OFRA01000091
[OFRA] wastewater metagenome; Lake Maggiore Verbania
17163
17239
+
fMet
CAT
[ENA]
¢þ
>WENV181376862
OFRA01000333
[OFRA] wastewater metagenome; Lake Maggiore Verbania
3660
3736
+
fMet
CAT
[ENA]
¢þ
>WENV181377060
OFRA01001792
[OFRA] wastewater metagenome; Lake Maggiore Verbania
840
766
-
fMet
CAT
[ENA]
¢þ
>WENV181377075
OFRA01002116
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1312
1388
+
fMet
CAT
[ENA]
¢þ
>WENV181377847
OFRA01037708
[OFRA] wastewater metagenome; Lake Maggiore Verbania
279
203
-
fMet
CAT
[ENA]
¢þ
>WENV181384302
OFRI01000083
[OFRI] wastewater metagenome; Exp Tend VB 90WW
14505
14429
-
fMet
CAT
[ENA]
¢þ
>WENV181391741
OFRU01000314
[OFRU] freshwater metagenome; Freshwater Lake
1537
1461
-
fMet
CAT
[ENA]
¢þ
>WENV181470585
OGEU01008468
[OGEU] metagenome; Human gut stool
4168
4244
+
fMet
CAT
[ENA]
¢þ
>WENV181472459
OGEZ01001422
[OGEZ] metagenome; Human gut stool
4626
4550
-
fMet
CAT
[ENA]
¢þ
>WENV181537000
OGHW01001498
[OGHW] metagenome; Human gut stool
10886
10810
-
fMet
CAT
[ENA]
¢þ
>WENV181556163
OGIU01003882
[OGIU] metagenome; Human gut stool
1019
943
-
fMet
CAT
[ENA]
¢þ
>WENV181810728
OGSV01002622
[OGSV] human gut metagenome; fecal sample 4 from infant 3
6
82
+
fMet
CAT
[ENA]
¢þ
>WENV181822891
OGUH01000168
[OGUH] human gut metagenome; fecal sample 3 from infant 3
1025
949
-
fMet
CAT
[ENA]
¢þ
>WENV181834009
OGUQ01022935
[OGUQ] metagenome; Human gut stool
440
516
+
fMet
CAT
[ENA]
¢þ
>WENV181853961
OGWJ01003084
[OGWJ] freshwater metagenome; freshwater
1617
1693
+
fMet
CAT
[ENA]
¢þ
>WENV181911778
OGYD01004328
[OGYD] human gut metagenome; faeces
4951
4875
-
fMet
CAT
[ENA]
¢þ
>WENV181934216
OGYT01002863
[OGYT] human gut metagenome; faeces
5152
5076
-
fMet
CAT
[ENA]
¢þ
>WENV181945426
OGZB01007058
[OGZB] human gut metagenome; faeces
2605
2681
+
fMet
CAT
[ENA]
¢þ
>W141194673
AYTI01000007
Actinomycetota
Corynebacterium ulcerans FRC58 [AYTI]
382980
383056
+
Met
CAT
[ENA]
¡û
>W08006527
ABJF01000080
Actinomycetota
Streptomyces sp. Mg1 [ABJF]
9470
9396
-
Met
CAT
[ENA]
¡û
>W141206895
AZMV01000001
Actinomycetota
Bifidobacterium moukalabense DSM 27321 [AZMV]
460690
460614
-
Met
CAT
[ENA]
¡û
>W141220678
AZYA01000028
Actinomycetota
Bifidobacterium sp. MSTE12 [AZYA]
974
898
-
Met
CAT
[ENA]
¡û
>WENV182401919
OIES01000036
[OIES] human gut metagenome; human gut
11016
10940
-
fMet
CAT
[ENA]
¢þ
>WENV182952295
OKVW01000052
[OKVW] human gut metagenome; human gut
10966
10890
-
fMet
CAT
[ENA]
¢þ
>WENV183108205
OLNN01000005
[OLNN] human gut metagenome; faeces
192665
192589
-
fMet
CAT
[ENA]
¢þ
>WENV183138644
OLOH01010400
[OLOH] human gut metagenome; faeces
1
77
+
fMet
CAT
[ENA]
¢þ
>WENV183174950
OLPE01041307
[OLPE] human gut metagenome; faeces
691
615
-
fMet
CAT
[ENA]
¢þ
>WENV183210931
OLQC01009361
[OLQC] human gut metagenome; faeces
1988
1912
-
fMet
CAT
[ENA]
¢þ
>WENV183298160
OLSM01065674
[OLSM] human gut metagenome; faeces
604
528
-
fMet
CAT
[ENA]
¢þ
>WENV183501904
OMGS01014718
[OMGS] human gut metagenome; human gut
534
610
+
fMet
CAT
[ENA]
¢þ
>WENV170540259
CWGX01000041
[CWGX] human gut metagenome; ENVO:feces
88827
88751
-
Met
CAT
[ENA]
¢þ
>C181021056
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
179672
179748
+
Met
CAT
-
¡û
>C181030112
CP018044
Actinomycetota
Bifidobacterium choerinum FMB-1 [CP018044]
358069
358143
+
Met
CAT
-
¡û
>C181052157
CP021394
Actinomycetota
Bifidobacterium breve NRBB56 [CP021394]
425107
425031
-
Met
CAT
-
¡û
>C181099913
CP024442
Actinomycetota
Corynebacterium pseudotuberculosis MB154 [CP024442]
604391
604467
+
Met
CAT
-
¡û
>C181102616
CP024602
Actinomycetota
Corynebacterium pseudotuberculosis PA08; A19 [CP024602]
575727
575803
+
Met
CAT
-
¡û
>C181134164
CP026501
Actinomycetota
Corynebacterium pseudotuberculosis MB295 [CP026501]
604429
604505
+
Met
CAT
-
¡û
>C181134341
CP026524
Actinomycetota
Corynebacterium pseudotuberculosis OVI03 [CP026524]
575560
575636
+
Met
CAT
-
¡û
>W141524729
JGZH01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum [JGZH]
79249
79325
+
Met
CAT
[ENA]
¡û
>W141524997
JGZN01000007
Actinomycetota
Bifidobacterium saguini DSM 23967 [JGZN]
152922
152998
+
Met
CAT
[ENA]
¡û
>C191145838
CP035717
Actinomycetota
Corynebacterium pseudotuberculosis CAPMI03 [CP035717]
575546
575622
+
Met
CAT
-
¡û
>C191149481
CP036257
Actinomycetota
Corynebacterium pseudotuberculosis Cap8W [CP036257]
575562
575638
+
Met
CAT
-
¡û
>C191151581
CP036457
Actinomycetota
Corynebacterium pseudotuberculosis 38MAT [CP036457]
575986
576062
+
Met
CAT
-
¡û
>C191159238
CP038431
Actinomycetota
Corynebacterium pseudotuberculosis Cap1C [CP038431]
575717
575793
+
Met
CAT
-
¡û
>C191172539
CP039866
Actinomycetota
Corynebacterium pseudotuberculosis Cap5W [CP039866]
575569
575645
+
Met
CAT
-
¡û
>C191172588
CP039867
Actinomycetota
Corynebacterium pseudotuberculosis Cap4W [CP039867]
575569
575645
+
Met
CAT
-
¡û
>W141759606
JNZL01000953
Actinomycetota
Sphaerisporangium viridialbum [JNZL]
8056
8132
+
Met
CAT
[ENA]
¡û
>W141765489
JODJ01000035
Actinomycetota
Streptomyces sp. NRRL S-575 [JODJ]
14740
14666
-
Met
CAT
[ENA]
¡û
>W1910178471
BJEZ01000006
Actinomycetota
Bifidobacterium moukalabense GG01 [BJEZ]
47667
47741
+
Met
CAT
[ENA]
¡û
>W1910178522
BJFA01000004
Actinomycetota
Bifidobacterium moukalabense GB01 [BJFA]
47667
47741
+
Met
CAT
[ENA]
¡û
>W1910178577
BJFB01000003
Actinomycetota
Bifidobacterium moukalabense GB03 [BJFB]
47667
47741
+
Met
CAT
[ENA]
¡û
>W1910178627
BJFC01000006
Actinomycetota
Bifidobacterium moukalabense GB04 [BJFC]
47666
47740
+
Met
CAT
[ENA]
¡û
>W1910178785
BJFF01000011
Actinomycetota
Bifidobacterium moukalabense GB65 [BJFF]
53030
53106
+
Met
CAT
[ENA]
¡û
>W1910178834
BJFG01000004
Actinomycetota
Bifidobacterium moukalabense CD14 [BJFG]
146511
146437
-
Met
CAT
[ENA]
¡û
>W1910178992
BJFJ01000004
Actinomycetota
Bifidobacterium moukalabense EB43 [BJFJ]
146511
146437
-
Met
CAT
[ENA]
¡û
>W1910829039
MWWT01000007
Actinomycetota
Alloscardovia macacae DSM 24762 [MWWT]
73388
73312
-
Met
CAT
[ENA]
¡û
>W1911079620
NMYC01000006
Actinomycetota
Bifidobacterium anseris 72 [NMYC]
36223
36297
+
Met
CAT
[ENA]
¡û
>W1810049455
PCHF01000006
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1595B [PCHF]
189923
189997
+
Met
CAT
[ENA]
¡û
>W1810049604
PCHI01000010
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1370B [PCHI]
204530
204604
+
Met
CAT
[ENA]
¡û
>W1810812825
QRZE01000002
Actinomycetota
Bifidobacterium longum AF14-34 [QRZE]
215373
215297
-
Met
CAT
[ENA]
¡û
>W1810813096
QRZJ01000002
Actinomycetota
Bifidobacterium longum AF14-22 [QRZJ]
160064
160140
+
Met
CAT
[ENA]
¡û
>W1810836677
QSRZ01000003
Actinomycetota
Bifidobacterium longum TF06-45A [QSRZ]
110675
110599
-
Met
CAT
[ENA]
¡û
>W1810837000
QSSF01000004
Actinomycetota
Bifidobacterium longum TF06-12AC [QSSF]
122282
122358
+
Met
CAT
[ENA]
¡û
>C151068986
CP010437
Actinomycetota
Bifidobacterium adolescentis BBMN23 [CP010437]
1834156
1834232
+
Met
CAT
[Ensembl]
¡û
>C151072955
CP010818
Actinomycetota
Corynebacterium ulcerans 131001 [CP010818]
643562
643638
+
Met
CAT
-
¡û
>C151073754
CP010889
Actinomycetota
Corynebacterium pseudotuberculosis 226 [CP010889]
575498
575574
+
Met
CAT
[Ensembl]
¡û
>C151087326
CP011913
Actinomycetota
Corynebacterium ulcerans FRC58 [CP011913]
684892
684968
+
Met
CAT
[Ensembl]
¡û
>W10127697
AEEQ01000001
Actinomycetota
Bifidobacterium dentium ATCC 27679 [AEEQ]
974
898
-
Met
CAT
[ENA]
¡û
>C10103833
CP001809
Actinomycetota
Corynebacterium pseudotuberculosis 1002 [CP001809]
575570
575646
+
Met
CAT
[Ensembl]
¡û
>W1511314959
JPUV01000001
Actinomycetota
Corynebacterium pseudotuberculosis MB20 [JPUV]
604505
604581
+
Met
CAT
[ENA]
¡û
>W11135185
AEEQ01000001
Actinomycetota
Bifidobacterium dentium ATCC 27679 [AEEQ]
974
898
-
Met
CAT
[ENA]
¡û
>W11137343
AEHJ01000032
Actinomycetota
Bifidobacterium dentium JCVIHMP022 [AEHJ]
995
919
-
Met
CAT
[ENA]
¡û
>W1511540014
JZDP01000074
Actinomycetota
Gordonia sihwensis no. 9 [JZDP]
8326
8250
-
Met
CAT
[ENA]
¡û
>W1511540015
JZDP01000074
Actinomycetota
Gordonia sihwensis no. 9 [JZDP]
8028
7952
-
Met
CAT
[ENA]
¡û
>W1511552798
JZUT01000001
Actinomycetota
Corynebacterium ulcerans LSPQ-04228 [JZUT]
375613
375689
+
Met
CAT
[ENA]
¡û
>C121006892
CP003152
Actinomycetota
Corynebacterium pseudotuberculosis 3/99-5 [CP003152]
575582
575658
+
Met
CAT
[Ensembl]
¡û
>C121008684
CP003215
Actinomycetota
Corynebacterium diphtheriae HC04 [CP003215]
658279
658355
+
Met
CAT
[Ensembl]
¡û
>C121012892
CP003421
Actinomycetota
Corynebacterium pseudotuberculosis 31 [CP003421]
576234
576310
+
Met
CAT
[Ensembl]
¡û
>C121014276
CP003540
Actinomycetota
Corynebacterium pseudotuberculosis 258 [CP003540]
571337
571413
+
Met
CAT
[Ensembl]
¡û
>C161054483
CP013263
Actinomycetota
Corynebacterium pseudotuberculosis MB66 [CP013263]
604457
604533
+
Met
CAT
-
¡û
>C161059700
CP013697
Actinomycetota
Corynebacterium pseudotuberculosis MEX25 [CP013697]
575466
575542
+
Met
CAT
-
¡û
>W121023118
AGZS01000002
Actinomycetota
Scardovia wiggsiae F0424 [AGZS]
261845
261921
+
Met
CAT
[ENA]
¡û
>W121077619
AKCI01000001
Actinomycetota
Scardovia wiggsiae F0424 [AKCI]
1170833
1170909
+
Met
CAT
[ENA]
¡û
>W1610060697
BCFK01000068
Actinomycetota
Bifidobacterium aesculapii [BCFK]
10935
10859
-
Met
CAT
[ENA]
¡û
>W1610075742
BCYE01000016
Actinomycetota
Bifidobacterium dentium [BCYE]
3970
3894
-
Met
CAT
[ENA]
¡û
>W1610520074
JDUT01000001
Actinomycetota
Bifidobacterium saguini DSM 23967 [JDUT]
204462
204386
-
Met
CAT
[ENA]
¡û
>W1610617129
LGSY02000163
Actinomycetota
Corynebacterium ulcerans [LGSY]
7952
8028
+
Met
CAT
[ENA]
¡û
>W1610625355
LIAM01000042
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
707
631
-
Met
CAT
[ENA]
¡û
>W1610625371
LIAN01000054
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
1586
1510
-
Met
CAT
[ENA]
¡û
>W1610663924
LJVH01000016
Actinomycetota
Corynebacterium ulcerans [LJVH]
196175
196251
+
Met
CAT
[ENA]
¡û
>W1710057952
BCFK01000068
Actinomycetota
Bifidobacterium aesculapii [BCFK]
10935
10859
-
Met
CAT
[ENA]
¡û
>W1710073557
BCYE01000016
Actinomycetota
Bifidobacterium dentium [BCYE]
3970
3894
-
Met
CAT
[ENA]
¡û
>W1710615487
JDUT01000001
Actinomycetota
Bifidobacterium saguini DSM 23967 [JDUT]
204462
204386
-
Met
CAT
[ENA]
¡û
>W1710742743
LGSY02000163
Actinomycetota
Corynebacterium ulcerans [LGSY]
7952
8028
+
Met
CAT
[ENA]
¡û
>W1710756482
LIAM01000042
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
707
631
-
Met
CAT
[ENA]
¡û
>W1710756498
LIAN01000054
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
1586
1510
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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