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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152220 (14 seq.)
>W1910318832
FSCG01000001
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 345 [FSCG]
388920
388995
+
Met
CAT
[ENA]
¡û
>W1910414580
FVIS01000007
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 404 [FVIS]
69452
69377
-
Met
CAT
[ENA]
¡û
>W1910421841
FVNT01000003
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 123 [FVNT]
521485
521560
+
Met
CAT
[ENA]
¡û
>W1910422021
FVNV01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 124 [FVNV]
520647
520722
+
Met
CAT
[ENA]
¡û
>W1910425497
FVQH01000001
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 1140 [FVQH]
67766
67691
-
Met
CAT
[ENA]
¡û
>W1910425944
FVQP01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 1141 [FVQP]
1119174
1119249
+
Met
CAT
[ENA]
¡û
>W1910435626
FVXL01000006
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 663 [FVXL]
81516
81441
-
Met
CAT
[ENA]
¡û
>W1910435955
FVXS01000003
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 705 [FVXS]
218063
218138
+
Met
CAT
[ENA]
¡û
>W1911187924
NQUI01000001
Actinomycetota
Mycobacterium abscessus subsp. abscessus A218 [NQUI]
67876
67801
-
Met
CAT
[ENA]
¡û
>W2011043812
NQUI01000001
Actinomycetota
Mycobacterium abscessus subsp. abscessus A218 [NQUI]
67876
67801
-
fMet
CAT
[ENA]
¡û
>W1510545400
CSTU01000066
Actinomycetota
Mycobacteroides abscessus PAP003 [CSTU]
4338
4413
+
Met
CAT
[ENA]
¡û
>W1510547782
CSVM01000001
Actinomycetota
Mycobacteroides abscessus PAP061 [CSVM]
62983
63058
+
Met
CAT
[ENA]
¡û
>W1510548506
CSVY01000067
Actinomycetota
Mycobacteroides abscessus PAP071 [CSVY]
4354
4429
+
Met
CAT
[ENA]
¡û
>W1510550675
CSXD01000028
Actinomycetota
Mycobacteroides abscessus PAP056 [CSXD]
60811
60736
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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