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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152315 (21 seq.)
>W1710878751
LMRF01000001
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
1125492
1125566
+
Met
CAT
[ENA]
¡û
>W1710996409
LQBK01000006
Actinomycetota
Kocuria polaris [LQBK]
128377
128451
+
Met
CAT
[ENA]
¡û
>W131099073
AOSQ01000036
Actinomycetota
Kocuria sp. UCD-OTCP [AOSQ]
18919
18995
+
Met
CAT
[ENA]
¡û
>W1711425200
MIEU01000016
Actinomycetota
Tersicoccus sp. Bi-70 [MIEU]
146703
146627
-
Met
CAT
[ENA]
¡û
>W1711491818
MKJW01000155
Actinomycetota
Kocuria sp. CNJ-770 [MKJW]
60135
60211
+
Met
CAT
[ENA]
¡û
>W1711667029
MRDE01000064
Actinomycetota
Tersicoccus phoenicis [MRDE]
169907
169833
-
Met
CAT
[ENA]
¡û
>C191134671
CP035103
Actinomycetota
Kocuria rosea ATCC 186 [CP035103]
2597928
2597853
-
Met
CAT
-
¡û
>C191210259
LR134391
Actinomycetota
Kocuria rosea NCTC7514 [LR134391]
1808018
1808093
+
Met
CAT
-
¡û
>C191212184
LR134487
Actinomycetota
Kocuria rosea NCTC7512 [LR134487]
1394338
1394263
-
Met
CAT
-
¡û
>W1910636720
LOMZ01000001
Actinomycetota
Kocuria flava S43 [LOMZ]
3089204
3089129
-
Met
CAT
[ENA]
¡û
>W1911245631
NSKF01000021
Actinomycetota
Kocuria sp. WN036 [NSKF]
47414
47489
+
Met
CAT
[ENA]
¡û
>W1810584689
QFBJ01000005
Actinomycetota
Kocuria rosea ATCC 186 [QFBJ]
120446
120521
+
Met
CAT
[ENA]
¡û
>W1810584717
QFBK01000004
Actinomycetota
Kocuria rosea ATCC 516 [QFBK]
139768
139843
+
Met
CAT
[ENA]
¡û
>W1810584773
QFBL01000006
Actinomycetota
Kocuria rosea ATCC 49321 [QFBL]
156680
156755
+
Met
CAT
[ENA]
¡û
>W1810700995
QMDP01000551
Actinomycetota
Kocuria rhizophila TNDT1 [QMDP]
1403
1478
+
Met
CAT
[ENA]
¡û
>W1511387241
JSUH01000007
Actinomycetota
Kocuria polaris CMS 76or [JSUH]
9022
8946
-
Met
CAT
[ENA]
¡û
>W1511638448
LDNX01000023
Actinomycetota
Kocuria sp. SM24M-10 [LDNX]
20521
20445
-
Met
CAT
[ENA]
¡û
>C161054279
CP013254
Actinomycetota
Kocuria flava HO-9041 [CP013254]
1851838
1851914
+
Met
CAT
[Ensembl]
¡û
>C161072571
CP014480
Actinomycetota
Kocuria turfanensis HO-9042 [CP014480]
3644337
3644411
+
Met
CAT
-
¡û
>W1610741097
LMRF01000001
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
1125492
1125566
+
Met
CAT
[ENA]
¡û
>W1610851066
LQBK01000006
Actinomycetota
Kocuria polaris [LQBK]
128377
128451
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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