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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152435 (47 seq.)
>W131180936
ARNN01000027
Betaproteobacteria
Vitreoscilla stercoraria DSM 513 [ARNN]
100
176
+
Asp
GTC
[ENA]
¡û
>W131180949
ARNN01000034
Betaproteobacteria
Vitreoscilla stercoraria DSM 513 [ARNN]
155991
156067
+
Asp
GTC
[ENA]
¡û
>WENV180102623
OAOZ01001214
[OAOZ] marine metagenome; ENVO:00002010
385
461
+
Asp
GTC
[ENA]
¢þ
>WENV180109989
OAPL01026599
[OAPL] marine metagenome; ENVO:00002010 for 'seawater
293
217
-
Asp
GTC
[ENA]
¢þ
>WENV180112999
OAPQ01000038
[OAPQ] marine metagenome; ENVO: 00002149
4751
4675
-
Asp
GTC
[ENA]
¢þ
>WENV180285565
OBID01529139
[OBID] metagenome; sludge
82
158
+
Asp
GTC
[ENA]
¢þ
>WENV180356626
OBNL01001754
[OBNL] marine metagenome; ENVO:00002010
940
864
-
Asp
GTC
[ENA]
¢þ
>WENV180367897
OBOF01009192
[OBOF] marine metagenome; ENVO:00002010
936
860
-
Asp
GTC
[ENA]
¢þ
>WENV180394640
OBPS01030209
[OBPS] marine metagenome; ENVO:00002010 seawater
493
417
-
Asp
GTC
[ENA]
¢þ
>WENV180396446
OBPV01005004
[OBPV] marine metagenome; ENVO:00002010
588
664
+
Asp
GTC
[ENA]
¢þ
>WENV180396754
OBPV01086472
[OBPV] marine metagenome; ENVO:00002010
77
1
-
Asp
GTC
[ENA]
¢þ
>WENV180398096
OBPZ01077122
[OBPZ] marine metagenome; ENVO:00002010
216
140
-
Asp
GTC
[ENA]
¢þ
>WENV180590483
OCOT01036070
[OCOT] marine metagenome; ENVO:00002010
267
343
+
Asp
GTC
[ENA]
¢þ
>WENV181000201
ODVU01000018
[ODVU] human metagenome; G_DNA_Anterior nares
14854
14778
-
Asp
GTC
[ENA]
¢þ
>WENV181126273
OEFV01033726
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
114
190
+
Asp
GTC
[ENA]
¢þ
>WENV181130951
OEFZ01000002
[OEFZ] human metagenome; G_DNA_Anterior nares
141008
141084
+
Asp
GTC
[ENA]
¢þ
>WENV181175541
OEJQ01005916
[OEJQ] human metagenome; G_DNA_Tongue dorsum
2089
2165
+
Asp
GTC
[ENA]
¢þ
>WENV181325751
OFLJ01021418
[OFLJ] seawater metagenome; seawater
506
582
+
Asp
GTC
[ENA]
¢þ
>WENV182560774
OJDU01051343
[OJDU] seawater metagenome; Sea water
369
445
+
Asp
GTC
[ENA]
¢þ
>WENV182571876
OJFK01022392
[OJFK] seawater metagenome; Sea water
889
813
-
Asp
GTC
[ENA]
¢þ
>WENV182594531
OJIV01029760
[OJIV] seawater metagenome; Sea water
615
539
-
Asp
GTC
[ENA]
¢þ
>WENV182642589
OJLO01000005
[OJLO] metagenome; surface
4455
4531
+
Asp
GTC
[ENA]
¢þ
>WENV183619597
OOFQ01021799
[OOFQ] marine metagenome; seawater
506
582
+
Asp
GTC
[ENA]
¢þ
>WENV170568612
FLMP01055434
[FLMP] seawater metagenome; seawater
435
359
-
Asp
GTC
[ENA]
¢þ
>WENV170569325
FLMP01168842
[FLMP] seawater metagenome; seawater
143
67
-
Asp
GTC
[ENA]
¢þ
>WENV170603683
FUWD010329482
[FUWD] metagenome; unknown
82
158
+
Asp
GTC
[ENA]
¢þ
>C181038281
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
904136
904212
+
Asp
GTC
-
¡û
>C181038283
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
904324
904400
+
Asp
GTC
-
¡û
>C181038285
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
904512
904588
+
Asp
GTC
-
¡û
>C181038287
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
904700
904776
+
Asp
GTC
-
¡û
>C181038289
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
904888
904964
+
Asp
GTC
-
¡û
>C181038291
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
905076
905152
+
Asp
GTC
-
¡û
>C181038293
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
905264
905340
+
Asp
GTC
-
¡û
>W1810052225
PDBT02000094
Betaproteobacteria
Neisseria sp. N95_16 [PDBT]
4884
4960
+
Asp
GTC
[ENA]
¡û
>W1810120643
PHTC01000037
Betaproteobacteria
Neisseria sp. N177_16 [PHTC]
22181
22105
-
Asp
GTC
[ENA]
¡û
>ENV09003971
ADIF01004663
Marine metagenome apSum_C1
492
416
-
Asp
GTC
[ENA]
¡û
>C11115755
CP002419
Betaproteobacteria
Neisseria meningitidis G2136 [CP002419]
203616
203692
+
Asp
GTC
[Ensembl]
¡û
>W1610074183
BCWL01000142
Betaproteobacteria
Bergeriella denitrificans NBRC 102155 [BCWL]
286
362
+
Asp
GTC
[ENA]
¡û
>W1610121007
CZPV01000009
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
146196
146120
-
Asp
GTC
[ENA]
¡û
>W1610121039
CZPV01000013
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
201999
201923
-
Asp
GTC
[ENA]
¡û
>W1610121041
CZPV01000013
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
201806
201730
-
Asp
GTC
[ENA]
¡û
>W1610121043
CZPV01000013
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
201615
201539
-
Asp
GTC
[ENA]
¡û
>W1710071301
BCWL01000142
Betaproteobacteria
Bergeriella denitrificans NBRC 102155 [BCWL]
286
362
+
Asp
GTC
[ENA]
¡û
>W1710123711
CZPV01000009
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
146196
146120
-
Asp
GTC
[ENA]
¡û
>W1710123743
CZPV01000013
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
201999
201923
-
Asp
GTC
[ENA]
¡û
>W1710123745
CZPV01000013
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
201806
201730
-
Asp
GTC
[ENA]
¡û
>W1710123747
CZPV01000013
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
201615
201539
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK