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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152443 (12 seq.)
>W1711188768
LWQT01000010
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
52226
52302
+
Arg
TCT
[ENA]
¡û
>W131094235
AONQ01000007
Alphaproteobacteria
Paramagnetospirillum caucaseum SO-1 [AONQ]
66451
66375
-
Arg
TCT
[ENA]
¡û
>C171041997
CP015848
Alphaproteobacteria
Magnetospirillum sp. ME-1 [CP015848]
191843
191767
-
Arg
TCT
-
¡û
>C013758
AP007255
Alphaproteobacteria
Magnetospirillum magneticum AMB-1 [AP007255]
3776339
3776263
-
Arg
TCT
[Ensembl]
¡û
>w001849
AAAP01003790
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
2533
2609
+
Arg
TCT
[ENA]
¡û
>C181155093
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
2285213
2285137
-
Arg
TCT
-
¡û
>C181155143
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
2285213
2285137
-
Arg
TCT
-
¡û
>W1910498951
FXXN01000015
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
60310
60234
-
Arg
TCT
[ENA]
¡û
>W1810101818
PGTO01000021
Alphaproteobacteria
Paramagnetospirillum kuznetsovii LBB-42 [PGTO]
23678
23754
+
Arg
TCT
[ENA]
¡û
>W1511510885
JXSL01000020
Alphaproteobacteria
Paramagnetospirillum magnetotacticum MS-1 [JXSL]
192264
192340
+
Arg
TCT
[ENA]
¡û
>C161108394
LN997848
Alphaproteobacteria
Magnetospirillum sp. XM-1 [LN997848]
4348972
4348896
-
Arg
TCT
-
¡û
>W1610990887
LWQT01000010
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
52226
52302
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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