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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152444 (38 seq.)
>W1711188786
LWQT01000049
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
62992
63068
+
Pro
GGG
[ENA]
¡û
>W131094250
AONQ01000027
Alphaproteobacteria
Paramagnetospirillum caucaseum SO-1 [AONQ]
21233
21309
+
Pro
GGG
[ENA]
¡û
>C171041987
CP015848
Alphaproteobacteria
Magnetospirillum sp. ME-1 [CP015848]
1682819
1682743
-
Pro
GGG
-
¡û
>C013741
AP007255
Alphaproteobacteria
Magnetospirillum magneticum AMB-1 [AP007255]
2560530
2560606
+
Pro
GGG
[Ensembl]
¡û
>WENV180344122
OBLK01237580
[OBLK] soil metagenome; Clay
48
121
+
Pro
GGG
[ENA]
¢þ
>w001860
AAAP01003827
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
28529
28607
+
Pro
GGG
[ENA]
¡û
>W141065481
AQPH01000012
Alphaproteobacteria
Magnetospirillum fulvum MGU-K5 [AQPH]
53935
54011
+
Pro
GGG
[ENA]
¡û
>WENV181227965
OFDN01089718
[OFDN] hot springs metagenome; Water
1
77
+
Pro
GGG
[ENA]
¢þ
>WENV181312037
OFJB01034406
[OFJB] sludge metagenome; sludge
217
141
-
Pro
GGG
[ENA]
¢þ
>W141222893
BACU01000275
Alphaproteobacteria
Azospirillum sp. B4 [BACU]
10926
10850
-
Pro
GGG
[ENA]
¡û
>W141241816
CAHP01000028
Alphaproteobacteria
Magnetospirillum molischianum DSM 120 [CAHP]
18344
18420
+
Pro
GGG
[ENA]
¡û
>WENV183725896
PJQF01032196
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
532
456
-
Pro
GGG
[ENA]
¢þ
>WENV183734974
PJUA01000311
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
9981
10057
+
Pro
GGG
[ENA]
¢þ
>WENV183736424
PJUC01002921
[PJUC] soil metagenome; Soil enriched on filter paper
2392
2468
+
Pro
GGG
[ENA]
¢þ
>WENV170705623
LNAP01000026
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
80606
80682
+
Pro
GGG
[ENA]
¢þ
>C181058287
CP022110
Alphaproteobacteria
Nitrospirillum amazonense CBAmc CBAmC [CP022110, CP022111, CP022112, CP022113]
1564743
1564819
+
Pro
GGG
-
¡û
>C181185926
CP029829
Alphaproteobacteria
Azospirillum ramasamyi M2T2B2 [CP029829]
708601
708677
+
Pro
GGG
-
¡û
>C191170814
CP039650
Alphaproteobacteria
Azospirillum sp. TSA2s TSA2S [CP039642, CP039645, CP039646, CP039647, CP039648, CP039649, CP039650]
2124979
2125055
+
Pro
GGG
-
¡û
>W141803737
JPGX01000463
Alphaproteobacteria
Nitrospirillum amazonense CBAmc [JPGX]
79986
79910
-
Pro
GGG
[ENA]
¡û
>W1910498978
FXXN01000025
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
486364
486288
-
Pro
GGG
[ENA]
¡û
>W1910612872
LGQS01000028
Alphaproteobacteria
Azospirillum sp. TSA6c [LGQS]
6647555
6647479
-
Pro
GGG
[ENA]
¡û
>W1910612934
LGQT01000039
Alphaproteobacteria
Azospirillum sp. TSH7 [LGQT]
54667
54743
+
Pro
GGG
[ENA]
¡û
>W1910612980
LGQU01000032
Alphaproteobacteria
Azospirillum sp. TSH20 [LGQU]
148354
148278
-
Pro
GGG
[ENA]
¡û
>W1910613089
LGQW01000015
Alphaproteobacteria
Azospirillum sp. TSH64 [LGQW]
247438
247514
+
Pro
GGG
[ENA]
¡û
>W1910613220
LGQY01000032
Alphaproteobacteria
Azospirillum sp. TSO5 [LGQY]
220367
220291
-
Pro
GGG
[ENA]
¡û
>W1910613301
LGQZ01000121
Alphaproteobacteria
Azospirillum sp. TSO22-1 [LGQZ]
28522
28598
+
Pro
GGG
[ENA]
¡û
>W1911139234
NOXS01000032
Alphaproteobacteria
Elstera cyanobacteriorum TH019 [NOXS]
375977
375901
-
Pro
GGG
[ENA]
¡û
>W1810058949
PDKW01000043
Alphaproteobacteria
Azospirillum palustre B2 [PDKW]
1751227
1751151
-
Pro
GGG
[ENA]
¡û
>W1810101793
PGTO01000004
Alphaproteobacteria
Paramagnetospirillum kuznetsovii LBB-42 [PGTO]
165659
165735
+
Pro
GGG
[ENA]
¡û
>W1810150160
PIUM01000004
Alphaproteobacteria
Telmatospirillum siberiense 26-4b1 [PIUM]
160389
160465
+
Pro
GGG
[ENA]
¡û
>W1511510897
JXSL01000027
Alphaproteobacteria
Paramagnetospirillum magnetotacticum MS-1 [JXSL]
331219
331295
+
Pro
GGG
[ENA]
¡û
>W1511569441
LAJY01000224
Alphaproteobacteria
Elstera litoralis Dia-1 [LAJY]
7293
7217
-
Pro
GGG
[ENA]
¡û
>W11157275
AFBX01000514
Alphaproteobacteria
Nitrospirillum amazonense Y2 [AFBX]
4716
4640
-
Pro
GGG
[ENA]
¡û
>C121016578
FQ311868
Alphaproteobacteria
Azospirillum lipoferum 4B [FQ311868]
821874
821950
+
Pro
GGG
[Ensembl]
¡û
>C161085679
CP015285
Alphaproteobacteria
Azospirillum humicireducens SgZ-5 [CP015285]
803061
803137
+
Pro
GGG
[Ensembl]
¡û
>C161108379
LN997848
Alphaproteobacteria
Magnetospirillum sp. XM-1 [LN997848]
3115776
3115852
+
Pro
GGG
-
¡û
>W1610990905
LWQT01000049
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
62992
63068
+
Pro
GGG
[ENA]
¡û
>W1710540184
FNWO01000001
Alphaproteobacteria
Magnetospirillum fulvum [FNWO]
352856
352780
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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