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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152445 (18 seq.)
>W1711188806
LWQT01000093
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
1979
2055
+
Ile
GAT
[ENA]
¡û
>W131094244
AONQ01000023
Alphaproteobacteria
Paramagnetospirillum caucaseum SO-1 [AONQ]
60142
60218
+
Ile
GAT
[ENA]
¡û
>C171041972
CP015848
Alphaproteobacteria
Magnetospirillum sp. ME-1 [CP015848]
4095417
4095493
+
Ile
GAT
-
¡û
>C171041994
CP015848
Alphaproteobacteria
Magnetospirillum sp. ME-1 [CP015848]
525868
525792
-
Ile
GAT
-
¡û
>C013735
AP007255
Alphaproteobacteria
Magnetospirillum magneticum AMB-1 [AP007255]
966491
966567
+
Ile
GAT
[Ensembl]
¡û
>C013738
AP007255
Alphaproteobacteria
Magnetospirillum magneticum AMB-1 [AP007255]
1828717
1828793
+
Ile
GAT
[Ensembl]
¡û
>w001871
AAAP01003867
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
43823
43899
+
Ile
GAT
[ENA]
¡û
>W141065512
AQPH01000116
Alphaproteobacteria
Magnetospirillum fulvum MGU-K5 [AQPH]
3485
3409
-
Ile
GAT
[ENA]
¡û
>W141241821
CAHP01000046
Alphaproteobacteria
Magnetospirillum molischianum DSM 120 [CAHP]
2071
2147
+
Ile
GAT
[ENA]
¡û
>WENV170961789
MLJW01001310
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
1735
1811
+
Ile
GAT
[ENA]
¢þ
>W1910498955
FXXN01000017
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
143223
143299
+
Ile
GAT
[ENA]
¡û
>W1910498966
FXXN01000022
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
74921
74845
-
Ile
GAT
[ENA]
¡û
>W1810101826
PGTO01000047
Alphaproteobacteria
Paramagnetospirillum kuznetsovii LBB-42 [PGTO]
1942
2018
+
Ile
GAT
[ENA]
¡û
>W1511510919
JXSL01000030
Alphaproteobacteria
Paramagnetospirillum magnetotacticum MS-1 [JXSL]
3495
3419
-
Ile
GAT
[ENA]
¡û
>C161108376
LN997848
Alphaproteobacteria
Magnetospirillum sp. XM-1 [LN997848]
2259875
2259951
+
Ile
GAT
-
¡û
>C161108391
LN997848
Alphaproteobacteria
Magnetospirillum sp. XM-1 [LN997848]
4635041
4634965
-
Ile
GAT
-
¡û
>W1610990925
LWQT01000093
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
1979
2055
+
Ile
GAT
[ENA]
¡û
>W1710540226
FNWO01000026
Alphaproteobacteria
Magnetospirillum fulvum [FNWO]
1446
1522
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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