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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152468 (65 seq.)
>W1711089368
LSZO01000170
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
1636
1560
-
Arg
ACG
[ENA]
¡û
>W1711089369
LSZO01000170
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
1516
1440
-
Arg
ACG
[ENA]
¡û
>W1711212824
LXJQ01000005
Gammaproteobacteria
Pseudomonas sp. 1D4 [LXJQ]
49823
49747
-
Arg
ACG
[ENA]
¡û
>W1711212825
LXJQ01000005
Gammaproteobacteria
Pseudomonas sp. 1D4 [LXJQ]
49675
49599
-
Arg
ACG
[ENA]
¡û
>W1711256232
LYSP01000004
Gammaproteobacteria
Pseudomonas sp. ENNP23 [LYSP]
55223
55147
-
Arg
ACG
[ENA]
¡û
>W1711256233
LYSP01000004
Gammaproteobacteria
Pseudomonas sp. ENNP23 [LYSP]
55075
54999
-
Arg
ACG
[ENA]
¡û
>W1712004888
NEHE01000001
Gammaproteobacteria
Pseudomonas sp. R5(2017) [NEHE]
238449
238373
-
Arg
ACG
[ENA]
¡û
>W1712004986
NEHF01000019
Gammaproteobacteria
Pseudomonas sp. R4(2017) [NEHF]
39215
39291
+
Arg
ACG
[ENA]
¡û
>W1712005153
NEHI01000008
Gammaproteobacteria
Pseudomonas sp. R44(2017) [NEHI]
39215
39291
+
Arg
ACG
[ENA]
¡û
>W1712005938
NEHV01000002
Gammaproteobacteria
Pseudomonas sp. R29(2017) [NEHV]
388318
388242
-
Arg
ACG
[ENA]
¡û
>W1712006075
NEHX01000004
Gammaproteobacteria
Pseudomonas sp. R27(2017) [NEHX]
39215
39291
+
Arg
ACG
[ENA]
¡û
>W1712006177
NEHZ01000002
Gammaproteobacteria
Pseudomonas sp. R25(2017) [NEHZ]
388318
388242
-
Arg
ACG
[ENA]
¡û
>W1712006423
NEID01000003
Gammaproteobacteria
Pseudomonas sp. R21(2017) [NEID]
39215
39291
+
Arg
ACG
[ENA]
¡û
>W1712006480
NEIE01000003
Gammaproteobacteria
Pseudomonas sp. R20(2017) [NEIE]
39215
39291
+
Arg
ACG
[ENA]
¡û
>W1712006546
NEIF01000004
Gammaproteobacteria
Pseudomonas sp. R19(2017) [NEIF]
388318
388242
-
Arg
ACG
[ENA]
¡û
>W1712006647
NEIH01000001
Gammaproteobacteria
Pseudomonas sp. R16(2017) [NEIH]
491665
491741
+
Arg
ACG
[ENA]
¡û
>W1712006853
NEIK01000004
Gammaproteobacteria
Pseudomonas sp. R12(2017) [NEIK]
388318
388242
-
Arg
ACG
[ENA]
¡û
>W1712007467
NEIU01000001
Gammaproteobacteria
Pseudomonas sp. B3(2017) [NEIU]
356702
356778
+
Arg
ACG
[ENA]
¡û
>W1712007774
NEIZ01000002
Gammaproteobacteria
Pseudomonas sp. B35(2017) [NEIZ]
406802
406878
+
Arg
ACG
[ENA]
¡û
>W1712008140
NEJF01000002
Gammaproteobacteria
Pseudomonas sp. B2(2017) [NEJF]
238760
238684
-
Arg
ACG
[ENA]
¡û
>W1712009144
NEJV01000002
Gammaproteobacteria
Pseudomonas sp. B11(2017) [NEJV]
406068
406144
+
Arg
ACG
[ENA]
¡û
>W131155999
AQPA01000074
Gammaproteobacteria
Pseudomonas thermotolerans DSM 14292 [AQPA]
122458
122534
+
Arg
ACG
[ENA]
¡û
>W131156000
AQPA01000074
Gammaproteobacteria
Pseudomonas thermotolerans DSM 14292 [AQPA]
122613
122689
+
Arg
ACG
[ENA]
¡û
>WENV180044257
MAVB01000384
[MAVB] viral metagenome; DNA from tracheal sample collected at farm Panchmahal, Godhra
428
352
-
Arg
ACG
[ENA]
¢þ
>W141216323
AZUT01000020
Gammaproteobacteria
Pseudomonas thermotolerans J53 [AZUT]
19
95
+
Arg
ACG
[ENA]
¡û
>W141216330
AZUT01000023
Gammaproteobacteria
Pseudomonas thermotolerans J53 [AZUT]
75378
75454
+
Arg
ACG
[ENA]
¡û
>WENV182891276
OKSH01000573
[OKSH] human gut metagenome; faeces
33793
33869
+
Arg
ACG
[ENA]
¢þ
>WENV183772477
PPYF01017005
[PPYF] human gut metagenome; stool from patient with Crohn's disease
100
176
+
Arg
ACG
[ENA]
¢þ
>WENV183780707
PPYF01176325
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2347
2271
-
Arg
ACG
[ENA]
¢þ
>WENV183780798
PPYF01182882
[PPYF] human gut metagenome; stool from patient with Crohn's disease
87
11
-
Arg
ACG
[ENA]
¢þ
>WENV183788816
PPYF01370525
[PPYF] human gut metagenome; stool from patient with Crohn's disease
100
176
+
Arg
ACG
[ENA]
¢þ
>WENV170999004
MWWJ01199210
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
186
260
+
Arg
ACG
[ENA]
¢þ
>C181217560
LS483498
Gammaproteobacteria
Morganella morganii NCTC12028 [LS483498]
2986053
2985977
-
Arg
ACG
-
¡û
>C181217561
LS483498
Gammaproteobacteria
Morganella morganii NCTC12028 [LS483498]
2985884
2985808
-
Arg
ACG
-
¡û
>C181217562
LS483498
Gammaproteobacteria
Morganella morganii NCTC12028 [LS483498]
2985755
2985679
-
Arg
ACG
-
¡û
>C181217563
LS483498
Gammaproteobacteria
Morganella morganii NCTC12028 [LS483498]
2985654
2985578
-
Arg
ACG
-
¡û
>C191099456
CP033056
Gammaproteobacteria
Morganella morganii L241 [CP033056]
2911470
2911394
-
Arg
ACG
-
¡û
>C191099457
CP033056
Gammaproteobacteria
Morganella morganii L241 [CP033056]
2911301
2911225
-
Arg
ACG
-
¡û
>C191099458
CP033056
Gammaproteobacteria
Morganella morganii L241 [CP033056]
2911172
2911096
-
Arg
ACG
-
¡û
>C191099459
CP033056
Gammaproteobacteria
Morganella morganii L241 [CP033056]
2911071
2910995
-
Arg
ACG
-
¡û
>W1911493298
OBEM01000004
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I9 [OBEM]
325664
325588
-
Arg
ACG
[ENA]
¡û
>W1911493299
OBEM01000004
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I9 [OBEM]
325513
325437
-
Arg
ACG
[ENA]
¡û
>W1810378798
PXJI01000033
Gammaproteobacteria
Pseudomonas otitidis PAM-1 [PXJI]
35185
35109
-
Arg
ACG
[ENA]
¡û
>W1810378799
PXJI01000033
Gammaproteobacteria
Pseudomonas otitidis PAM-1 [PXJI]
35037
34961
-
Arg
ACG
[ENA]
¡û
>W1810579336
QEQL01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I12 [QEQL]
377294
377370
+
Arg
ACG
[ENA]
¡û
>W1810579337
QEQL01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I12 [QEQL]
377445
377521
+
Arg
ACG
[ENA]
¡û
>W1810579561
QEQP01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I10 [QEQP]
326162
326086
-
Arg
ACG
[ENA]
¡û
>W1810579562
QEQP01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I10 [QEQP]
326011
325935
-
Arg
ACG
[ENA]
¡û
>W1810579674
QEQR01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I11 [QEQR]
377110
377186
+
Arg
ACG
[ENA]
¡û
>W1810579675
QEQR01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I11 [QEQR]
377261
377337
+
Arg
ACG
[ENA]
¡û
>W1511525062
JYFT01000075
Gammaproteobacteria
Pseudomonas sp. FeS53a [JYFT]
81323
81247
-
Arg
ACG
[ENA]
¡û
>W1511525063
JYFT01000075
Gammaproteobacteria
Pseudomonas sp. FeS53a [JYFT]
81175
81099
-
Arg
ACG
[ENA]
¡û
>W1511530344
JYKO01000002
Gammaproteobacteria
Pseudomonas sp. LFM046 [JYKO]
486738
486662
-
Arg
ACG
[ENA]
¡û
>W1610077952
BCZU01000005
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
215392
215468
+
Arg
ACG
[ENA]
¡û
>W1610077953
BCZU01000005
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
215561
215637
+
Arg
ACG
[ENA]
¡û
>W1610077954
BCZU01000005
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
215690
215766
+
Arg
ACG
[ENA]
¡û
>W1610077955
BCZU01000005
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
215791
215867
+
Arg
ACG
[ENA]
¡û
>W1610923746
LSZO01000170
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
1636
1560
-
Arg
ACG
[ENA]
¡û
>W1610923747
LSZO01000170
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
1516
1440
-
Arg
ACG
[ENA]
¡û
>W1710075510
BCZU01000005
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
215392
215468
+
Arg
ACG
[ENA]
¡û
>W1710075511
BCZU01000005
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
215561
215637
+
Arg
ACG
[ENA]
¡û
>W1710075512
BCZU01000005
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
215690
215766
+
Arg
ACG
[ENA]
¡û
>W1710075513
BCZU01000005
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
215791
215867
+
Arg
ACG
[ENA]
¡û
>W1710555593
FOJP01000008
Gammaproteobacteria
Pseudomonas otitidis [FOJP]
120051
120127
+
Arg
ACG
[ENA]
¡û
>W1710555594
FOJP01000008
Gammaproteobacteria
Pseudomonas otitidis [FOJP]
120199
120275
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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