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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152510 (50 seq.)
>W1710797210
LJSW01000002
Alphaproteobacteria
Erythrobacteraceae bacterium HL-111 [LJSW]
96348
96424
+
Pro
GGG
[ENA]
¡û
>W1710866210
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
1413585
1413661
+
Pro
GGG
[ENA]
¡û
>W1710882984
LMVG01000001
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
437518
437442
-
Pro
GGG
[ENA]
¡û
>W1710894111
LNFK01000049
Alphaproteobacteria
Sphingomonadales bacterium Ga0077559 [LNFK]
84
8
-
Pro
GGG
[ENA]
¡û
>W1710926891
LOET01000064
Alphaproteobacteria
Sphingomonadales bacterium BRH_c3 [LOET]
6698
6622
-
Pro
GGG
[ENA]
¡û
>W1711073267
LSIJ01000064
Alphaproteobacteria
Sphingomonas sp. CCH10-B3 [LSIJ]
65186
65110
-
Pro
GGG
[ENA]
¡û
>W1711501949
MKSE01000019
Alphaproteobacteria
Altererythrobacter sp. 66-12 [MKSE]
362115
362191
+
Pro
GGG
[ENA]
¡û
>C171056117
CP017057
Alphaproteobacteria
Erythrobacter litoralis DSM 8509 [CP017057]
2090430
2090506
+
Pro
GGG
-
¡û
>W131229857
AUHC01000009
Alphaproteobacteria
Erythrobacter cryptus DSM 12079 [AUHC]
137649
137725
+
Pro
GGG
[ENA]
¡û
>WENV180020402
FTCZ01002981
[FTCZ] metagenome; soil
1768
1692
-
Pro
GGG
[ENA]
¢þ
>WENV180039550
LLBY010089556
[LLBY] soil metagenome; soil from tomato rhizosphere
264
188
-
Pro
GGG
[ENA]
¢þ
>WENV180594079
OCOY01028491
[OCOY] marine metagenome; ENVO:00002010
267
343
+
Pro
GGG
[ENA]
¢þ
>WENV180690217
OCZS010000782
[OCZS] soil metagenome; soil
8091
8015
-
Pro
GGG
[ENA]
¢þ
>WENV181155722
OEID01382958
[OEID] soil metagenome; soil
130
54
-
Pro
GGG
[ENA]
¢þ
>WENV181184416
OEKC01000152
[OEKC] metagenome; 1998
6420
6344
-
Pro
GGG
[ENA]
¢þ
>WENV181189830
OEOF01247226
[OEOF] activated sludge metagenome; Activated Sludge
188
263
+
Pro
GGG
[ENA]
¢þ
>WENV181233641
OFET01000022
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
203471
203395
-
Pro
GGG
[ENA]
¢þ
>WENV181234321
OFEU01000037
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
19196
19272
+
Pro
GGG
[ENA]
¢þ
>WENV181385084
OFRI01032137
[OFRI] wastewater metagenome; Exp Tend VB 90WW
853
777
-
Pro
GGG
[ENA]
¢þ
>WENV183725943
PJQF01042822
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
359
283
-
Pro
GGG
[ENA]
¢þ
>WENV183729086
PJTQ01004171
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
2081
2157
+
Pro
GGG
[ENA]
¢þ
>WENV183731468
PJTT01000006
[PJTT] soil metagenome; Soil (2) enriched on wood chips
633472
633396
-
Pro
GGG
[ENA]
¢þ
>WENV183741221
PJUF01060319
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
108
32
-
Pro
GGG
[ENA]
¢þ
>WENV183741255
PJUF01068748
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
15
91
+
Pro
GGG
[ENA]
¢þ
>WENV183741315
PJUF01084056
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
361
285
-
Pro
GGG
[ENA]
¢þ
>WENV170009614
APMI01000906
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
63808
63732
-
Pro
GGG
[ENA]
¢þ
>WENV170372863
CETS01141777
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
886
810
-
Pro
GGG
[ENA]
¢þ
>WENV170575069
FLYN01028749
[FLYN] hot springs metagenome; Sediment
3
79
+
Pro
GGG
[ENA]
¢þ
>WENV170710666
LNFM01002350
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
44380
44456
+
Pro
GGG
[ENA]
¢þ
>WENV170733675
LULK01000001
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
262383
262307
-
Pro
GGG
[ENA]
¢þ
>WENV170759550
LUMT01000006
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
261794
261718
-
Pro
GGG
[ENA]
¢þ
>WENV170760717
LUMU01000005
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
169252
169176
-
Pro
GGG
[ENA]
¢þ
>WENV170761559
LUMV01001468
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
2301
2225
-
Pro
GGG
[ENA]
¢þ
>C181088870
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
1963624
1963700
+
Pro
GGG
-
¡û
>C191002574
AP018498
Alphaproteobacteria
Altererythrobacter sp. B11 [AP018498]
2965813
2965889
+
Pro
GGG
-
¡û
>W141564488
JIAU01000008
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
80045
80121
+
Pro
GGG
[ENA]
¡û
>W141700174
JMIX01000003
Alphaproteobacteria
Erythrobacter litoralis [JMIX]
136554
136478
-
Pro
GGG
[ENA]
¡û
>W1911688176
QLJH01000025
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt15_0812 [QLJH]
30893
30817
-
Pro
GGG
[ENA]
¡û
>W1810579404
QEQM01000001
Alphaproteobacteria
Sphingomonas sp. URHD0007 [QEQM]
1721438
1721362
-
Pro
GGG
[ENA]
¡û
>C151004665
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
1452348
1452272
-
Pro
GGG
[Ensembl]
¡û
>C151082901
CP011452
Alphaproteobacteria
Croceibacterium atlanticum 26DY36 [CP011452]
920150
920226
+
Pro
GGG
-
¡û
>C151086740
CP011805
Alphaproteobacteria
Pelagerythrobacter marensis KCTC 22370 [CP011805]
716121
716045
-
Pro
GGG
[Ensembl]
¡û
>C121015272
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
1428902
1428826
-
Pro
GGG
[Ensembl]
¡û
>W1610661167
LJSW01000002
Alphaproteobacteria
Erythrobacteraceae bacterium HL-111 [LJSW]
96348
96424
+
Pro
GGG
[ENA]
¡û
>W1610728556
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
1413585
1413661
+
Pro
GGG
[ENA]
¡û
>W1610744910
LMVG01000001
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
437518
437442
-
Pro
GGG
[ENA]
¡û
>W1610754377
LNFK01000049
Alphaproteobacteria
Sphingomonadales bacterium Ga0077559 [LNFK]
84
8
-
Pro
GGG
[ENA]
¡û
>W1610784433
LOET01000064
Alphaproteobacteria
Sphingomonadales bacterium BRH_c3 [LOET]
6698
6622
-
Pro
GGG
[ENA]
¡û
>W1610912572
LSIJ01000064
Alphaproteobacteria
Sphingomonas sp. CCH10-B3 [LSIJ]
65186
65110
-
Pro
GGG
[ENA]
¡û
>W1710573606
FOXP01000005
Alphaproteobacteria
Sphingomonas rubra [FOXP]
69548
69472
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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