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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152743 (85 seq.)
>W1710871645
LMLK01000026
Gammaproteobacteria
Erwinia sp. Leaf53 [LMLK]
205144
205220
+
Val
GAC
[ENA]
¡û
>W131087777
AOCZ01000088
Gammaproteobacteria
Winslowiella toletana DAPP-PG 735 [AOCZ]
99072
98996
-
Val
GAC
[ENA]
¡û
>W131110160
APJK01000018
Gammaproteobacteria
Erwinia tracheiphila PSU-1 [APJK]
5011
5087
+
Val
GAC
[ENA]
¡û
>W131124575
APVG01000019
Gammaproteobacteria
Aeromonas diversa 2478-85 [APVG]
68792
68716
-
Val
GAC
[ENA]
¡û
>W131180110
ARMW01000026
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
31342
31418
+
Val
GAC
[ENA]
¡û
>W131180112
ARMW01000026
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
31528
31604
+
Val
GAC
[ENA]
¡û
>W1711666362
MRBS01000003
Gammaproteobacteria
Pantoea sp. 1.19 [MRBS]
83538
83462
-
Val
GAC
[ENA]
¡û
>W1711666364
MRBS01000003
Gammaproteobacteria
Pantoea sp. 1.19 [MRBS]
83355
83279
-
Val
GAC
[ENA]
¡û
>W1711678714
MRUL01000002
Gammaproteobacteria
Izhakiella australiensis D4N98 [MRUL]
250089
250165
+
Val
GAC
[ENA]
¡û
>W1711678716
MRUL01000002
Gammaproteobacteria
Izhakiella australiensis D4N98 [MRUL]
250322
250398
+
Val
GAC
[ENA]
¡û
>C171039431
CP015579
Gammaproteobacteria
Tatumella citrea DSM 13699 [CP015579]
1831421
1831345
-
Val
GAC
-
¡û
>C171039433
CP015579
Gammaproteobacteria
Tatumella citrea DSM 13699 [CP015579]
1831256
1831180
-
Val
GAC
-
¡û
>W131211296
ATMI01000019
Gammaproteobacteria
Tatumella saanichensis NML 06-3099 [ATMI]
19125
19049
-
Val
GAC
[ENA]
¡û
>W141241892
CAHS01000015
Gammaproteobacteria
Erwinia piriflorinigrans CFBP 5888 [CAHS]
84570
84494
-
Val
GAC
[ENA]
¡û
>C08004864
CU468135
Gammaproteobacteria
Erwinia tasmaniensis Et1/99 [CU468135]
2057166
2057242
+
Val
GAC
[Ensembl]
¡û
>WENV170700250
LIDZ01009451
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
171127
171203
+
Val
GAC
[ENA]
¢þ
>WENV170700252
LIDZ01009451
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
171293
171369
+
Val
GAC
[ENA]
¢þ
>W141461810
JFGT01000006
Gammaproteobacteria
Pantoea sp. IMH [JFGT]
510946
510870
-
Val
GAC
[ENA]
¡û
>W141461812
JFGT01000006
Gammaproteobacteria
Pantoea sp. IMH [JFGT]
510781
510705
-
Val
GAC
[ENA]
¡û
>W141462179
JFHN01000042
Gammaproteobacteria
Erwinia mallotivora [JFHN]
39769
39693
-
Val
GAC
[ENA]
¡û
>C191021098
CP022725
Gammaproteobacteria
Erwinia persicina B64 [CP022725]
1948201
1948277
+
Val
GAC
-
¡û
>C191155830
CP037950
Gammaproteobacteria
Erwinia sp. QL-Z3 [CP037950]
3473613
3473537
-
Val
GAC
-
¡û
>C191155832
CP037950
Gammaproteobacteria
Erwinia sp. QL-Z3 [CP037950]
3473447
3473371
-
Val
GAC
-
¡û
>W141820894
JQNE01000001
Gammaproteobacteria
Erwinia sp. 9145 [JQNE]
1716752
1716676
-
Val
GAC
[ENA]
¡û
>W1910572449
JMEE01000001
Gammaproteobacteria
[Pantoea] beijingensis LMG 27579 [JMEE]
130882
130806
-
Val
GAC
[ENA]
¡û
>W1910572451
JMEE01000001
Gammaproteobacteria
[Pantoea] beijingensis LMG 27579 [JMEE]
130714
130638
-
Val
GAC
[ENA]
¡û
>W1910576080
JRZZ01000032
Gammaproteobacteria
Erwinia sp. B116 [JRZZ]
45709
45785
+
Val
GAC
[ENA]
¡û
>W1910760314
MNCH01000010
Gammaproteobacteria
Erwinia sp. OLSSP12 [MNCH]
76060
76136
+
Val
GAC
[ENA]
¡û
>W1910760316
MNCH01000010
Gammaproteobacteria
Erwinia sp. OLSSP12 [MNCH]
76278
76354
+
Val
GAC
[ENA]
¡û
>W1910760797
MNKW01000009
Gammaproteobacteria
Erwinia sp. OLCASP19 [MNKW]
43185
43109
-
Val
GAC
[ENA]
¡û
>W1910760799
MNKW01000009
Gammaproteobacteria
Erwinia sp. OLCASP19 [MNKW]
42967
42891
-
Val
GAC
[ENA]
¡û
>W1910760863
MNKX01000006
Gammaproteobacteria
Erwinia sp. OLMTSP26 [MNKX]
43185
43109
-
Val
GAC
[ENA]
¡û
>W1910760865
MNKX01000006
Gammaproteobacteria
Erwinia sp. OLMTSP26 [MNKX]
42967
42891
-
Val
GAC
[ENA]
¡û
>W1910760938
MNKY01000007
Gammaproteobacteria
Erwinia sp. OLMDSP33 [MNKY]
43185
43109
-
Val
GAC
[ENA]
¡û
>W1910760940
MNKY01000007
Gammaproteobacteria
Erwinia sp. OLMDSP33 [MNKY]
42967
42891
-
Val
GAC
[ENA]
¡û
>W1910768734
MOMA01000015
Gammaproteobacteria
Erwinia sp. OLTSP20 [MOMA]
43238
43162
-
Val
GAC
[ENA]
¡û
>W1910768736
MOMA01000015
Gammaproteobacteria
Erwinia sp. OLTSP20 [MOMA]
43020
42944
-
Val
GAC
[ENA]
¡û
>W1910768805
MOMB01000048
Gammaproteobacteria
Erwinia sp. OLFS4 [MOMB]
100270
100346
+
Val
GAC
[ENA]
¡û
>W1910768807
MOMB01000048
Gammaproteobacteria
Erwinia sp. OLFS4 [MOMB]
100488
100564
+
Val
GAC
[ENA]
¡û
>W1910803838
MTCG01000002
Gammaproteobacteria
Tatumella sp. OPLPL6 [MTCG]
2456
2380
-
Val
GAC
[ENA]
¡û
>W1910803952
MTCH01000110
Gammaproteobacteria
Erwinia sp. OLMDLW33 [MTCH]
2049
1973
-
Val
GAC
[ENA]
¡û
>W1910803986
MTCI01000006
Gammaproteobacteria
Erwinia sp. OAMSP11 [MTCI]
76548
76624
+
Val
GAC
[ENA]
¡û
>W1910803988
MTCI01000006
Gammaproteobacteria
Erwinia sp. OAMSP11 [MTCI]
76766
76842
+
Val
GAC
[ENA]
¡û
>W1910852581
NBIM01000001
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
687660
687736
+
Val
GAC
[ENA]
¡û
>W1910852583
NBIM01000001
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
687838
687914
+
Val
GAC
[ENA]
¡û
>W1911174166
NQJF01000008
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
34915
34991
+
Val
GAC
[ENA]
¡û
>W1911174168
NQJF01000008
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
35090
35166
+
Val
GAC
[ENA]
¡û
>W1911386056
NVXY01000001
Gammaproteobacteria
Enterobacterales bacterium CwR94 [NVXY]
365480
365404
-
Val
GAC
[ENA]
¡û
>W1911386058
NVXY01000001
Gammaproteobacteria
Enterobacterales bacterium CwR94 [NVXY]
365296
365220
-
Val
GAC
[ENA]
¡û
>W1911568595
PCQJ01000001
Gammaproteobacteria
Erwinia billingiae MYb121 [PCQJ]
441701
441777
+
Val
GAC
[ENA]
¡û
>W1911568597
PCQJ01000001
Gammaproteobacteria
Erwinia billingiae MYb121 [PCQJ]
441867
441943
+
Val
GAC
[ENA]
¡û
>W1911671423
QGAC01000001
Gammaproteobacteria
Erwinia persicina CFBP13511 [QGAC]
242725
242649
-
Val
GAC
[ENA]
¡û
>W1810053945
PDET01000021
Gammaproteobacteria
Pantoea coffeiphila 342 [PDET]
46401
46477
+
Val
GAC
[ENA]
¡û
>W1810390095
PXYG01000001
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
777629
777705
+
Val
GAC
[ENA]
¡û
>W1810390186
PXYH01000002
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
83213
83137
-
Val
GAC
[ENA]
¡û
>W1810390188
PXYH01000002
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
83039
82963
-
Val
GAC
[ENA]
¡û
>W1810471888
QAGM01000020
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
36718
36642
-
Val
GAC
[ENA]
¡û
>W1810471890
QAGM01000020
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
36499
36423
-
Val
GAC
[ENA]
¡û
>W1810533043
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
1071870
1071946
+
Val
GAC
[ENA]
¡û
>W1510076692
CDPK01000003
Gammaproteobacteria
Erwinia sp. ErVv1 [CDPK]
565145
565069
-
Val
GAC
[ENA]
¡û
>W1510076693
CDPK01000003
Gammaproteobacteria
Erwinia sp. ErVv1 [CDPK]
565037
564961
-
Val
GAC
[ENA]
¡û
>W1510076695
CDPK01000003
Gammaproteobacteria
Erwinia sp. ErVv1 [CDPK]
564871
564795
-
Val
GAC
[ENA]
¡û
>W1510076696
CDPK01000003
Gammaproteobacteria
Erwinia sp. ErVv1 [CDPK]
564755
564679
-
Val
GAC
[ENA]
¡û
>W1511205196
JMSO01000117
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [JMSO]
8740
8816
+
Val
GAC
[ENA]
¡û
>W1511248266
JNVB01000038
Gammaproteobacteria
Erwinia oleae DAPP-PG531 [JNVB]
27521
27597
+
Val
GAC
[ENA]
¡û
>W1511356779
JRUQ01000045
Gammaproteobacteria
Erwinia typographi M043b [JRUQ]
36969
36893
-
Val
GAC
[ENA]
¡û
>W1511356781
JRUQ01000045
Gammaproteobacteria
Erwinia typographi M043b [JRUQ]
36803
36727
-
Val
GAC
[ENA]
¡û
>W1511358680
JRXE01000008
Gammaproteobacteria
Winslowiella iniecta B120 [JRXE]
161239
161315
+
Val
GAC
[ENA]
¡û
>W1511358737
JRXF01000009
Gammaproteobacteria
Winslowiella iniecta B149 [JRXF]
60895
60819
-
Val
GAC
[ENA]
¡û
>W1511507542
JXNU01000003
Gammaproteobacteria
Erwinia tracheiphila BuffGH [JXNU]
398878
398954
+
Val
GAC
[ENA]
¡û
>C121007370
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
2206571
2206495
-
Val
GAC
[Ensembl]
¡û
>C121007372
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
2206380
2206304
-
Val
GAC
[Ensembl]
¡û
>C121016324
FP236843
Gammaproteobacteria
Erwinia billingiae Eb661 [FP236843]
2162702
2162626
-
Val
GAC
[Ensembl]
¡û
>C121016326
FP236843
Gammaproteobacteria
Erwinia billingiae Eb661 [FP236843]
2162536
2162460
-
Val
GAC
[Ensembl]
¡û
>W1610070777
BCTN01000003
Gammaproteobacteria
Erwinia persicina NBRC 102418 [BCTN]
39874
39950
+
Val
GAC
[ENA]
¡û
>W1610575667
LAGP01000029
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGP]
52871
52947
+
Val
GAC
[ENA]
¡û
>W1610575723
LAGQ01000050
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGQ]
51805
51881
+
Val
GAC
[ENA]
¡û
>W1610733991
LMLK01000026
Gammaproteobacteria
Erwinia sp. Leaf53 [LMLK]
205144
205220
+
Val
GAC
[ENA]
¡û
>W1710068099
BCTN01000003
Gammaproteobacteria
Erwinia persicina NBRC 102418 [BCTN]
39874
39950
+
Val
GAC
[ENA]
¡û
>W1710570349
FOVC01000001
Gammaproteobacteria
Izhakiella capsodis [FOVC]
510916
510840
-
Val
GAC
[ENA]
¡û
>W1710570351
FOVC01000001
Gammaproteobacteria
Izhakiella capsodis [FOVC]
510694
510618
-
Val
GAC
[ENA]
¡û
>W1710693931
LAGP01000029
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGP]
52871
52947
+
Val
GAC
[ENA]
¡û
>W1710693987
LAGQ01000050
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGQ]
51805
51881
+
Val
GAC
[ENA]
¡û
>W1710754840
LHXI01000010
Gammaproteobacteria
Erwinia billingiae [LHXI]
204154
204230
+
Val
GAC
[ENA]
¡û
>W1710754842
LHXI01000010
Gammaproteobacteria
Erwinia billingiae [LHXI]
204320
204396
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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