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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152983 (40 seq.)
>W1710872213
LMLV01000001
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
2167669
2167593
-
Asp
GTC
[ENA]
¡û
>W1710872247
LMLV01000013
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
63327
63251
-
Asp
GTC
[ENA]
¡û
>W1710872260
LMLV01000032
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
696
772
+
Asp
GTC
[ENA]
¡û
>W1710879680
LMRV01000042
Bacillota
Paenibacillus sp. Soil522 [LMRV]
857
933
+
Asp
GTC
[ENA]
¡û
>C171098055
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
328745
328821
+
Asp
GTC
-
¡û
>C171098076
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
3481427
3481503
+
Asp
GTC
-
¡û
>C171098098
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
3052193
3052117
-
Asp
GTC
-
¡û
>W131234951
AULE01000025
Bacillota
Paenibacillus taiwanensis DSM 18679 [AULE]
724
800
+
Asp
GTC
[ENA]
¡û
>W131234958
AULE01000025
Bacillota
Paenibacillus taiwanensis DSM 18679 [AULE]
23124
23200
+
Asp
GTC
[ENA]
¡û
>W131234969
AULE01000028
Bacillota
Paenibacillus taiwanensis DSM 18679 [AULE]
143167
143091
-
Asp
GTC
[ENA]
¡û
>W131234974
AULE01000029
Bacillota
Paenibacillus taiwanensis DSM 18679 [AULE]
836
912
+
Asp
GTC
[ENA]
¡û
>W141080207
ATMS01000012
Bacillota
Paenibacillus alvei A6-6i-x [ATMS]
158593
158517
-
Asp
GTC
[ENA]
¡û
>W141080219
ATMS01000031
Bacillota
Paenibacillus alvei A6-6i-x [ATMS]
70735
70659
-
Asp
GTC
[ENA]
¡û
>W141080265
ATMS01000085
Bacillota
Paenibacillus alvei A6-6i-x [ATMS]
690822
690746
-
Asp
GTC
[ENA]
¡û
>WENV183514730
OMKS01029463
[OMKS] sediment metagenome; hot spring sediment
349
273
-
Asp
GTC
[ENA]
¢þ
>WENV183734911
PJUA01000134
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
71368
71292
-
Asp
GTC
[ENA]
¢þ
>WENV183735054
PJUA01000634
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
14496
14420
-
Asp
GTC
[ENA]
¢þ
>WENV170021333
BBPF01006518
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
14
90
+
Asp
GTC
[ENA]
¢þ
>WENV170593744
FUFK010993615
[FUFK] metagenome; unknown
220
144
-
Asp
GTC
[ENA]
¢þ
>C181021408
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
3291506
3291582
+
Asp
GTC
-
¡û
>C181021420
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
3584815
3584891
+
Asp
GTC
-
¡û
>C181021446
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
1826479
1826403
-
Asp
GTC
-
¡û
>W1910155104
BIMH01000033
Bacillota
Paenibacillus validus NBRC 15382 [BIMH]
60482
60406
-
Asp
GTC
[ENA]
¡û
>W1810701684
QMFA01000007
Bacillota
Paenibacillus sp. YN15 [QMFA]
38904
38979
+
Asp
GTC
[ENA]
¡û
>W1511577174
LAQO01000012
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
286
362
+
Asp
GTC
[ENA]
¡û
>W1511577183
LAQO01000018
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
189288
189212
-
Asp
GTC
[ENA]
¡û
>W1511577211
LAQO01000042
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
70999
70923
-
Asp
GTC
[ENA]
¡û
>W1610049666
BBFE01000038
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
39875
39799
-
Asp
GTC
[ENA]
¡û
>W1610049685
BBFE01000059
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
22636
22560
-
Asp
GTC
[ENA]
¡û
>W1610049707
BBFE01000080
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
608
684
+
Asp
GTC
[ENA]
¡û
>W1610734559
LMLV01000001
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
2167669
2167593
-
Asp
GTC
[ENA]
¡û
>W1610734593
LMLV01000013
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
63327
63251
-
Asp
GTC
[ENA]
¡û
>W1610734606
LMLV01000032
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
696
772
+
Asp
GTC
[ENA]
¡û
>W1610742026
LMRV01000042
Bacillota
Paenibacillus sp. Soil522 [LMRV]
857
933
+
Asp
GTC
[ENA]
¡û
>W1710046065
BBFE01000038
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
39875
39799
-
Asp
GTC
[ENA]
¡û
>W1710046084
BBFE01000059
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
22636
22560
-
Asp
GTC
[ENA]
¡û
>W1710046106
BBFE01000080
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
608
684
+
Asp
GTC
[ENA]
¡û
>W1710560604
FONN01000010
Bacillota
Paenibacillus algorifonticola [FONN]
212671
212595
-
Asp
GTC
[ENA]
¡û
>W1710560614
FONN01000013
Bacillota
Paenibacillus algorifonticola [FONN]
988
1064
+
Asp
GTC
[ENA]
¡û
>W1710560641
FONN01000028
Bacillota
Paenibacillus algorifonticola [FONN]
71287
71211
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK