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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152999 (34 seq.)
>W1711249830
LYMA02000095
Alphaproteobacteria
Orientia tsutsugamushi [LYMA]
1227
1303
+
Ile
GAT
[ENA]
¡û
>W1711249857
LYMB01000296
Alphaproteobacteria
Orientia tsutsugamushi [LYMB]
1169
1245
+
Ile
GAT
[ENA]
¡û
>C015515
AM494475
Alphaproteobacteria
Orientia tsutsugamushi str. Boryong [AM494475]
1112022
1111946
-
Ile
GAT
[Ensembl]
¡û
>WENV180027299
FTIX01075203
[FTIX] metagenome; soil
218
294
+
Ile
GAT
[ENA]
¢þ
>W141255359
CBUA010000086
Alphaproteobacteria
Rickettsia monacensis IrR/Munich [CBUA]
951
875
-
Ile
GAT
[ENA]
¡û
>C08007131
AP008981
Alphaproteobacteria
Orientia tsutsugamushi str. Ikeda [AP008981]
1842280
1842356
+
Ile
GAT
[Ensembl]
¡û
>C181002264
AP017572
Alphaproteobacteria
Rickettsia japonica DT-1 [AP017572]
524374
524450
+
Ile
GAT
-
¡û
>C181002429
AP017577
Alphaproteobacteria
Rickettsia japonica MZ08014 [AP017577]
524374
524450
+
Ile
GAT
-
¡û
>C181002594
AP017602
Alphaproteobacteria
Rickettsia japonica YH_M [AP017602]
524374
524450
+
Ile
GAT
-
¡û
>C181019117
CP016305
Alphaproteobacteria
Rickettsia sp. MEAM1 [Bemisia tabaci] [CP016305]
1346699
1346623
-
Ile
GAT
-
¡û
>C181203884
LS398547
Alphaproteobacteria
Orientia tsutsugamushi [LS398547]
445332
445408
+
Ile
GAT
-
¡û
>C181203937
LS398548
Alphaproteobacteria
Orientia tsutsugamushi [LS398548]
931255
931179
-
Ile
GAT
-
¡û
>C181203963
LS398549
Alphaproteobacteria
Orientia tsutsugamushi [LS398549]
1877489
1877413
-
Ile
GAT
-
¡û
>C181203979
LS398550
Alphaproteobacteria
Orientia tsutsugamushi [LS398550]
654374
654450
+
Ile
GAT
-
¡û
>C181204012
LS398551
Alphaproteobacteria
Orientia tsutsugamushi str. Gilliam [LS398551]
860679
860755
+
Ile
GAT
-
¡û
>C181204057
LS398552
Alphaproteobacteria
Orientia tsutsugamushi [LS398552]
1889977
1889901
-
Ile
GAT
-
¡û
>W1911541426
OOHR01000016
Alphaproteobacteria
Orientia tsutsugamushi [OOHR]
25109
25033
-
Ile
GAT
[ENA]
¡û
>W1911544944
OUNA01000008
Alphaproteobacteria
Orientia tsutsugamushi [OUNA]
18575
18651
+
Ile
GAT
[ENA]
¡û
>W1511574132
LANM01000127
Alphaproteobacteria
Orientia tsutsugamushi str. Karp [LANM]
1287
1211
-
Ile
GAT
[ENA]
¡û
>W1511574157
LANN01000035
Alphaproteobacteria
Orientia tsutsugamushi str. Kato PP [LANN]
8381
8457
+
Ile
GAT
[ENA]
¡û
>W1511574210
LANP01000016
Alphaproteobacteria
Candidatus Orientia mediorientalis str. Fuller [LANP]
22851
22775
-
Ile
GAT
[ENA]
¡û
>W1511574250
LANQ01000001
Alphaproteobacteria
Rickettsia felis str. Pedreira [LANQ]
190934
190858
-
Ile
GAT
[ENA]
¡û
>W1511574523
LANY01000010
Alphaproteobacteria
Orientia tsutsugamushi str. TA763 [LANY]
5404
5328
-
Ile
GAT
[ENA]
¡û
>W1511574576
LANZ01000213
Alphaproteobacteria
Orientia tsutsugamushi str. UT76 [LANZ]
1345
1421
+
Ile
GAT
[ENA]
¡û
>W1511574847
LAOH01000044
Alphaproteobacteria
Rickettsia amblyommatis amblyommii str. Darkwater [LAOH]
9026
9102
+
Ile
GAT
[ENA]
¡û
>W1511574999
LAOM01000001
Alphaproteobacteria
Orientia tsutsugamushi str. Sido [LAOM]
12199
12275
+
Ile
GAT
[ENA]
¡û
>W1511575080
LAOP01000001
Alphaproteobacteria
Rickettsia endosymbiont of Ixodes pacificus of Ixodes pacificus Humboldt [LAOP]
593822
593898
+
Ile
GAT
[ENA]
¡û
>W1511575152
LAOR01000032
Alphaproteobacteria
Orientia tsutsugamushi str. UT144 [LAOR]
2062
1986
-
Ile
GAT
[ENA]
¡û
>C121010594
CP003311
Alphaproteobacteria
Rickettsia rickettsii str. Hlp#2 [CP003311]
611684
611608
-
Ile
GAT
[Ensembl]
¡û
>C121011201
CP003334
Alphaproteobacteria
Rickettsia amblyommatis str. GAT-30V [CP003334]
608638
608714
+
Ile
GAT
[Ensembl]
¡û
>C121011250
CP003338
Alphaproteobacteria
Rickettsia australis str. Cutlack [CP003338]
926643
926567
-
Ile
GAT
[Ensembl]
¡û
>W121070037
AJWD01000117
Alphaproteobacteria
Rickettsia sp. MEAM1 (Bemisia tabaci) [AJWD]
410
334
-
Ile
GAT
[ENA]
¡û
>W1611016804
LYMA01000095
Alphaproteobacteria
Orientia tsutsugamushi [LYMA]
1227
1303
+
Ile
GAT
[ENA]
¡û
>W1611016831
LYMB01000296
Alphaproteobacteria
Orientia tsutsugamushi [LYMB]
1169
1245
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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