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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.153761 (90 seq.)
>W1711712319
MTBV01000064
Gammaproteobacteria
Actinobacillus suis [MTBV]
65670
65585
-
Leu
GAG
[ENA]
¡û
>W1711712361
MTBW01000025
Gammaproteobacteria
Actinobacillus suis [MTBW]
28507
28592
+
Leu
GAG
[ENA]
¡û
>W1711712431
MTBX01000084
Gammaproteobacteria
Actinobacillus suis [MTBX]
28092
28177
+
Leu
GAG
[ENA]
¡û
>W1711765892
MUXX01000012
Gammaproteobacteria
Haemophilus paraphrohaemolyticus [MUXX]
446480
446395
-
Leu
GAG
[ENA]
¡û
>W1711765903
MUXY01000001
Gammaproteobacteria
Haemophilus parahaemolyticus [MUXY]
326151
326236
+
Leu
GAG
[ENA]
¡û
>W1711766025
MUYA01000007
Gammaproteobacteria
Haemophilus paracuniculus [MUYA]
259382
259467
+
Leu
GAG
[ENA]
¡û
>W131170460
ARFN01000039
Gammaproteobacteria
Actinobacillus capsulatus DSM 19761 [ARFN]
82265
82180
-
Leu
GAG
[ENA]
¡û
>C000982
CP000569
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 5b str. L20 [CP000569]
848635
848550
-
Leu
GAG
[Ensembl]
¡û
>WENV180123160
OASV01043022
[OASV] human gut metagenome; faeces
121
36
-
Leu
GAG
[ENA]
¢þ
>WENV180178285
OAWH01000664
[OAWH] human gut metagenome; faeces
2061
2146
+
Leu
GAG
[ENA]
¢þ
>w003100
AACK01000088
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 1 str. 4074 [AACK]
266
351
+
Leu
GAG
[ENA]
¡û
>W141039892
ALYN01000002
Gammaproteobacteria
Actinobacillus pleuropneumoniae S8 [ALYN]
199644
199729
+
Leu
GAG
[ENA]
¡û
>WENV180456965
OBXT01000533
[OBXT] human gut metagenome; faeces
6689
6774
+
Leu
GAG
[ENA]
¢þ
>W141063168
APBZ01000016
Gammaproteobacteria
Glaesserella parasuis D74 [APBZ]
199875
199790
-
Leu
GAG
[ENA]
¡û
>WENV180727501
ODGU01006424
[ODGU] human metagenome; G_DNA_Supragingival plaque
115
30
-
Leu
GAG
[ENA]
¢þ
>WENV180739172
ODHD01011082
[ODHD] human metagenome; G_DNA_Supragingival plaque
967
1052
+
Leu
GAG
[ENA]
¢þ
>WENV180739447
ODHD01096062
[ODHD] human metagenome; G_DNA_Supragingival plaque
101
16
-
Leu
GAG
[ENA]
¢þ
>WENV180758935
ODHY01000010
[ODHY] human metagenome; G_DNA_Buccal mucosa
6075
6160
+
Leu
GAG
[ENA]
¢þ
>WENV180857251
ODLA01019929
[ODLA] human metagenome; G_DNA_Buccal mucosa
6
91
+
Leu
GAG
[ENA]
¢þ
>WENV180958890
ODUL01099644
[ODUL] human metagenome; G_DNA_Supragingival plaque
113
28
-
Leu
GAG
[ENA]
¢þ
>WENV181012826
ODWK01034316
[ODWK] human metagenome; G_DNA_Supragingival plaque
208
123
-
Leu
GAG
[ENA]
¢þ
>WENV181025374
ODXB01000054
[ODXB] human metagenome; G_DNA_Buccal mucosa
7468
7383
-
Leu
GAG
[ENA]
¢þ
>WENV181068162
ODZI01145388
[ODZI] human metagenome; G_DNA_Supragingival plaque
309
224
-
Leu
GAG
[ENA]
¢þ
>WENV181124110
OEFQ01011837
[OEFQ] human metagenome; G_DNA_Supragingival plaque
46
131
+
Leu
GAG
[ENA]
¢þ
>WENV181157596
OEIG01013885
[OEIG] human metagenome; G_DNA_Hard palate
791
876
+
Leu
GAG
[ENA]
¢þ
>WENV181158279
OEIH01000175
[OEIH] human metagenome; G_DNA_Supragingival plaque
25420
25505
+
Leu
GAG
[ENA]
¢þ
>WENV181183055
OEJV01154491
[OEJV] human metagenome; G_DNA_Supragingival plaque
157
72
-
Leu
GAG
[ENA]
¢þ
>WENV181429836
OGCY01002302
[OGCY] metagenome; Human gut stool
486
571
+
Leu
GAG
[ENA]
¢þ
>WENV181457570
OGEI01002286
[OGEI] metagenome; Human gut stool
84
1
-
Leu
GAG
[ENA]
¢þ
>WENV181589273
OGKK01013902
[OGKK] metagenome; Human gut stool
466
381
-
Leu
GAG
[ENA]
¢þ
>C08000927
CP000687
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 3 str. JL03 [CP000687]
813142
813060
-
Leu
GAG
[Ensembl]
¡û
>C08000866
CP001091
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 7 str. AP76 [CP001091]
876213
876131
-
Leu
GAG
[Ensembl]
¡û
>C181171487
CP029003
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 1 str. 4074 [CP029003]
860569
860484
-
Leu
GAG
-
¡û
>C181176108
CP029206
Gammaproteobacteria
Actinobacillus porcitonsillarum 9953L55 [CP029206]
1797993
1797908
-
Leu
GAG
-
¡û
>C181192318
CP030753
Gammaproteobacteria
Actinobacillus pleuropneumoniae S4074 [CP030753]
860576
860491
-
Leu
GAG
-
¡û
>C181208367
LS483358
Gammaproteobacteria
Actinobacillus pleuropneumoniae NCTC11384 [LS483358]
746955
747040
+
Leu
GAG
-
¡û
>C181225299
LT906456
Gammaproteobacteria
Actinobacillus suis NCTC12996 [LT906456]
677851
677936
+
Leu
GAG
-
¡û
>C191021052
CP022715
Gammaproteobacteria
Actinobacillus pleuropneumoniae KL 16 [CP022715]
2019157
2019072
-
Leu
GAG
-
¡û
>C191198737
LR134169
Gammaproteobacteria
Actinobacillus lignieresii NCTC10568 [LR134169]
695481
695566
+
Leu
GAG
-
¡û
>C191205708
LR134310
Gammaproteobacteria
Actinobacillus equuli NCTC8529 [LR134310]
2322747
2322832
+
Leu
GAG
-
¡û
>C191213621
LR134515
Gammaproteobacteria
Actinobacillus pleuropneumoniae NCTC10976 [LR134515]
848025
847940
-
Leu
GAG
-
¡û
>W09121968
ACFT01000002
Gammaproteobacteria
Actinobacillus minor 202 [ACFT]
90367
90282
-
Leu
GAG
[ENA]
¡û
>W09133773
ACQL01000069
Gammaproteobacteria
Actinobacillus minor NM305 [ACQL]
23902
23817
-
Leu
GAG
[ENA]
¡û
>W1810531530
QCXP01000009
Gammaproteobacteria
Actinobacillus suis AS108/13 [QCXP]
65628
65543
-
Leu
GAG
[ENA]
¡û
>W1810578459
QEPS01000001
Gammaproteobacteria
Haemophilus parahaemolyticus C2006000788 [QEPS]
681196
681111
-
Leu
GAG
[ENA]
¡û
>W1810579129
QEQF01000001
Gammaproteobacteria
Haemophilus paraphrohaemolyticus C2014016342 [QEQF]
243871
243786
-
Leu
GAG
[ENA]
¡û
>C151015008
CP006943
Gammaproteobacteria
Mannheimia varigena USDA-ARS-USMARC-1296 [CP006943]
1246322
1246407
+
Leu
GAG
[Ensembl]
¡û
>C151015069
CP006944
Gammaproteobacteria
Mannheimia varigena USDA-ARS-USMARC-1312 [CP006944]
1170049
1170134
+
Leu
GAG
[Ensembl]
¡û
>C151015296
CP006953
Gammaproteobacteria
Mannheimia varigena USDA-ARS-USMARC-1388 [CP006953]
1038691
1038606
-
Leu
GAG
[Ensembl]
¡û
>C151015351
CP006954
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-188 [CP006954]
1887931
1887846
-
Leu
GAG
[Ensembl]
¡û
>C151015408
CP006955
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-189 [CP006955]
1965429
1965344
-
Leu
GAG
[Ensembl]
¡û
>C151015444
CP006956
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-190 [CP006956]
525878
525963
+
Leu
GAG
[Ensembl]
¡û
>C151032763
CP007715
Gammaproteobacteria
Actinobacillus equuli subsp. equuli 19392 [CP007715]
701563
701648
+
Leu
GAG
[Ensembl]
¡û
>C151044966
CP009159
Gammaproteobacteria
Actinobacillus suis ATCC 33415 [CP009159]
677879
677964
+
Leu
GAG
[Ensembl]
¡û
>W1510064448
CDBC01000001
Gammaproteobacteria
Haemophilus parahaemolyticus G321 [CDBC]
248922
248837
-
Leu
GAG
[ENA]
¡û
>W10116672
ADOE01000017
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 2 str. S1536 [ADOE]
11259
11174
-
Leu
GAG
[ENA]
¡û
>W10116712
ADOF01000026
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 4 str. M62 [ADOF]
24048
23963
-
Leu
GAG
[ENA]
¡û
>W10116751
ADOG01000011
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 6 str. Femo [ADOG]
94300
94215
-
Leu
GAG
[ENA]
¡û
>W10116795
ADOI01000021
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261 [ADOI]
14498
14413
-
Leu
GAG
[ENA]
¡û
>W10116842
ADOJ01000010
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 10 str. D13039 [ADOJ]
140435
140350
-
Leu
GAG
[ENA]
¡û
>W10116887
ADOK01000013
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 11 str. 56153 [ADOK]
140904
140819
-
Leu
GAG
[ENA]
¡û
>W10116937
ADOL01000021
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 12 str. 1096 [ADOL]
34479
34394
-
Leu
GAG
[ENA]
¡û
>W10116976
ADOM01000016
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 13 str. N273 [ADOM]
32514
32429
-
Leu
GAG
[ENA]
¡û
>W10120619
ADXN01000006
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 2 str. 4226 [ADXN]
85600
85685
+
Leu
GAG
[ENA]
¡û
>W10120720
ADXO01000033
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 6 str. Femo [ADXO]
61163
61248
+
Leu
GAG
[ENA]
¡û
>W1511387874
JSVF01000013
Gammaproteobacteria
Actinobacillus pleuropneumoniae 1022 [JSVF]
32571
32486
-
Leu
GAG
[ENA]
¡û
>W1511387920
JSVG01000013
Gammaproteobacteria
Actinobacillus pleuropneumoniae 460 [JSVG]
107834
107749
-
Leu
GAG
[ENA]
¡û
>W1511388149
JSVV01000015
Gammaproteobacteria
Actinobacillus pleuropneumoniae 780 [JSVV]
32550
32465
-
Leu
GAG
[ENA]
¡û
>W1511388194
JSVX01000014
Gammaproteobacteria
Actinobacillus pleuropneumoniae 597 [JSVX]
107821
107736
-
Leu
GAG
[ENA]
¡û
>W1511388240
JSVY01000011
Gammaproteobacteria
Actinobacillus pleuropneumoniae 5651 [JSVY]
107834
107749
-
Leu
GAG
[ENA]
¡û
>W1511388288
JSVZ01000011
Gammaproteobacteria
Actinobacillus pleuropneumoniae 518 [JSVZ]
32575
32490
-
Leu
GAG
[ENA]
¡û
>W11121483
ADOD01000014
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 1 str. 4074 [ADOD]
35757
35672
-
Leu
GAG
[ENA]
¡û
>W11121525
ADOE01000017
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 2 str. S1536 [ADOE]
11259
11174
-
Leu
GAG
[ENA]
¡û
>W11121565
ADOF01000026
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 4 str. M62 [ADOF]
24048
23963
-
Leu
GAG
[ENA]
¡û
>W11121604
ADOG01000011
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 6 str. Femo [ADOG]
94300
94215
-
Leu
GAG
[ENA]
¡û
>W11121648
ADOI01000021
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261 [ADOI]
14498
14413
-
Leu
GAG
[ENA]
¡û
>W11121695
ADOJ01000010
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 10 str. D13039 [ADOJ]
140435
140350
-
Leu
GAG
[ENA]
¡û
>W11121740
ADOK01000013
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 11 str. 56153 [ADOK]
140904
140819
-
Leu
GAG
[ENA]
¡û
>W11121790
ADOL01000021
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 12 str. 1096 [ADOL]
34479
34394
-
Leu
GAG
[ENA]
¡û
>W11121829
ADOM01000016
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 13 str. N273 [ADOM]
32514
32429
-
Leu
GAG
[ENA]
¡û
>W11127363
ADXN01000006
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 2 str. 4226 [ADXN]
85600
85685
+
Leu
GAG
[ENA]
¡û
>W11127464
ADXO01000033
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 6 str. Femo [ADXO]
61163
61248
+
Leu
GAG
[ENA]
¡û
>W11150082
AEVG01000093
Gammaproteobacteria
Actinobacillus ureae ATCC 25976 [AEVG]
15318
15233
-
Leu
GAG
[ENA]
¡û
>C161108179
LN908249
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 8 [LN908249]
819903
819818
-
Leu
GAG
[Ensembl]
¡û
>W121065005
AJMU01000064
Gammaproteobacteria
Haemophilus paraphrohaemolyticus HK411 [AJMU]
13427
13342
-
Leu
GAG
[ENA]
¡û
>W121066909
AJSW01000008
Gammaproteobacteria
Haemophilus parahaemolyticus HK385 [AJSW]
41096
41011
-
Leu
GAG
[ENA]
¡û
>C131006019
CP003745
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-192 [CP003745]
490593
490678
+
Leu
GAG
[Ensembl]
¡û
>C131008780
CP003875
Gammaproteobacteria
Actinobacillus suis H91-0380 [CP003875]
719503
719588
+
Leu
GAG
[Ensembl]
¡û
>W1610516302
JACI01000001
Gammaproteobacteria
Bibersteinia trehalosi Y31 [JACI]
864610
864525
-
Leu
GAG
[ENA]
¡û
>W1710611644
JACI01000001
Gammaproteobacteria
Bibersteinia trehalosi Y31 [JACI]
864610
864525
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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