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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154011 (27 seq.)
>W1710906983
LNOL01000016
Betaproteobacteria
Alcaligenes faecalis [LNOL]
36395
36310
-
Leu
TAA
[ENA]
¡û
>W1711710478
MSZN01000001
Betaproteobacteria
Alcaligenes faecalis [MSZN]
117717
117802
+
Leu
TAA
[ENA]
¡û
>W1711710534
MSZO01000002
Betaproteobacteria
Alcaligenes faecalis [MSZO]
274793
274708
-
Leu
TAA
[ENA]
¡û
>W1711710626
MSZP01000011
Betaproteobacteria
Alcaligenes faecalis [MSZP]
117546
117631
+
Leu
TAA
[ENA]
¡û
>W1711710667
MSZQ01000011
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
22997
22912
-
Leu
TAA
[ENA]
¡û
>W1711710716
MSZR01000013
Betaproteobacteria
Alcaligenes faecalis [MSZR]
23056
22971
-
Leu
TAA
[ENA]
¡û
>W1711711878
MTBI01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
287841
287756
-
Leu
TAA
[ENA]
¡û
>C171115510
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
2797857
2797942
+
Leu
TAA
-
¡û
>W131051756
AMXV01000012
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
153160
153245
+
Leu
TAA
[ENA]
¡û
>W131223051
AUBT01000004
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
370734
370819
+
Leu
TAA
[ENA]
¡û
>W141104416
AVOG02000012
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
122420
122505
+
Leu
TAA
[ENA]
¡û
>W141237707
BBJQ01000002
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
121793
121878
+
Leu
TAA
[ENA]
¡û
>WENV170655494
JTFN01038317
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
511
596
+
Leu
TAA
[ENA]
¢þ
>WENV170656679
JTFO01032945
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1164
1079
-
Leu
TAA
[ENA]
¢þ
>C181053229
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
2912950
2913035
+
Leu
TAA
-
¡û
>C181088587
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
2550318
2550403
+
Leu
TAA
-
¡û
>C191085266
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
3096535
3096620
+
Leu
TAA
-
¡û
>C191091138
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
1419008
1419093
+
Leu
TAA
-
¡û
>C191113954
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
3824982
3825067
+
Leu
TAA
-
¡û
>W1810583878
QEXO01000001
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
273626
273541
-
Leu
TAA
[ENA]
¡û
>W1511321043
JQCV01000007
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
186824
186739
-
Leu
TAA
[ENA]
¡û
>W1511537448
JZBR01000002
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
789399
789484
+
Leu
TAA
[ENA]
¡û
>C161051335
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
789399
789484
+
Leu
TAA
[Ensembl]
¡û
>W1610093563
CYTB01000003
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
402
317
-
Leu
TAA
[ENA]
¡û
>W1610765997
LNOL01000016
Betaproteobacteria
Alcaligenes faecalis [LNOL]
36395
36310
-
Leu
TAA
[ENA]
¡û
>W1610921542
LSUO01000027
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
2209
2124
-
Leu
TAA
[ENA]
¡û
>W1710082541
BDHG01000006
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
410
325
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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