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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154076 (53 seq.)
>W1710806373
LKAX01000007
Gammaproteobacteria
Pseudomonas sp. ADP [LKAX]
209506
209591
+
Leu
CAA
[ENA]
¡û
>W1710813428
LKJO01000153
Gammaproteobacteria
Pseudomonas citronellolis [LKJO]
12460
12375
-
Leu
CAA
[ENA]
¡û
>W1710815776
LKKN01000108
Gammaproteobacteria
Pseudomonas citronellolis [LKKN]
6723
6808
+
Leu
CAA
[ENA]
¡û
>W1711101718
LTNB01000663
Gammaproteobacteria
Pseudomonas sp. HMSC75E02 [LTNB]
20411
20326
-
Leu
CAA
[ENA]
¡û
>W1711268750
LZDG02000043
Gammaproteobacteria
Pseudomonas sp. AU11447 [LZDG]
87877
87792
-
Leu
CAA
[ENA]
¡û
>W1711292857
LZYC01000028
Gammaproteobacteria
Pseudomonas sp. EGD-AKN5 [LZYC]
80527
80442
-
Leu
CAA
[ENA]
¡û
>W1711295479
MACM02000039
Gammaproteobacteria
Pseudomonas sp. AU12215 [MACM]
53926
53841
-
Leu
CAA
[ENA]
¡û
>W1711744375
MUHV01000002
Gammaproteobacteria
Pseudomonas sp. T [MUHV]
148599
148684
+
Leu
CAA
[ENA]
¡û
>W1711945824
NBMS01000026
Gammaproteobacteria
Pseudomonas sp. A46 [NBMS]
44719
44804
+
Leu
CAA
[ENA]
¡û
>W1712108202
NJBA01000006
Gammaproteobacteria
Pseudomonas nitroreducens [NJBA]
336243
336158
-
Leu
CAA
[ENA]
¡û
>C171044844
CP015992
Gammaproteobacteria
Pseudomonas sp. TCU-HL1 [CP015992]
1268635
1268550
-
Leu
CAA
-
¡û
>W131052602
AMZB01000138
Gammaproteobacteria
Pseudomonas nitroreducens TX1 [AMZB]
202010
202095
+
Leu
CAA
[ENA]
¡û
>W131061438
ANIR01000003
Gammaproteobacteria
Pseudomonas sp. M1 [ANIR]
591533
591448
-
Leu
CAA
[ENA]
¡û
>W131231098
AUIE01000014
Gammaproteobacteria
Pseudomonas resinovorans DSM 21078 [AUIE]
117905
117990
+
Leu
CAA
[ENA]
¡û
>WENV181192335
OEPS010577322
[OEPS] soil metagenome; soil
79
164
+
Leu
CAA
[ENA]
¢þ
>WENV181731207
OGQD01000142
[OGQD] human gut metagenome; faeces
32548
32463
-
Leu
CAA
[ENA]
¢þ
>W141213230
AZRU01000006
Gammaproteobacteria
Pseudomonas nitroreducens HBP1 [AZRU]
87280
87195
-
Leu
CAA
[ENA]
¡û
>WENV170966649
MTEY01002567
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
67844
67759
-
Leu
CAA
[ENA]
¢þ
>C181000776
AP014862
Gammaproteobacteria
Pseudomonas furukawaii KF707 [AP014862]
1135163
1135078
-
Leu
CAA
-
¡û
>W141727378
JNCW01000025
Gammaproteobacteria
Pseudomonas sp. AAC [JNCW]
15080
15165
+
Leu
CAA
[ENA]
¡û
>W141727799
JNFN01000196
Gammaproteobacteria
Pseudomonas nitroreducens [JNFN]
54214
54129
-
Leu
CAA
[ENA]
¡û
>W141727818
JNFO01000050
Gammaproteobacteria
Pseudomonas nitroreducens [JNFO]
17521
17606
+
Leu
CAA
[ENA]
¡û
>W1910548387
FZOM01000001
Gammaproteobacteria
Pseudomonas nitroreducens LMG 21614 [FZOM]
1285916
1286001
+
Leu
CAA
[ENA]
¡û
>W1910549200
FZPC01000001
Gammaproteobacteria
Pseudomonas delhiensis RLD-1 [FZPC]
49409
49494
+
Leu
CAA
[ENA]
¡û
>W1911586051
PISI01000032
Gammaproteobacteria
Pseudomonas citronellolis DSM 50332 [PISI]
80613
80528
-
Leu
CAA
[ENA]
¡û
>W1810017264
BGPP01000002
Gammaproteobacteria
Pseudomonas citronellolis LA18T [BGPP]
137632
137547
-
Leu
CAA
[ENA]
¡û
>W1810378800
PXJI01000034
Gammaproteobacteria
Pseudomonas otitidis PAM-1 [PXJI]
35011
35096
+
Leu
CAA
[ENA]
¡û
>W1810607788
QGSL01000088
Gammaproteobacteria
Pseudomonas sp. RW407 [QGSL]
807055
806970
-
Leu
CAA
[ENA]
¡û
>C151001305
AP013068
Gammaproteobacteria
Pseudomonas resinovorans NBRC 106553 [AP013068]
1203664
1203579
-
Leu
CAA
[Ensembl]
¡û
>C151100256
HG322950
Gammaproteobacteria
Pseudomonas knackmussii B13 [HG322950]
1078012
1077927
-
Leu
CAA
[Ensembl]
¡û
>W1511430118
JUEH01000003
Gammaproteobacteria
Pseudomonas nitroreducens Aramco J [JUEH]
87289
87204
-
Leu
CAA
[ENA]
¡û
>W1511483886
JWMC01000057
Gammaproteobacteria
Pseudomonas sp. PI1 [JWMC]
31688
31773
+
Leu
CAA
[ENA]
¡û
>W1511525034
JYFT01000041
Gammaproteobacteria
Pseudomonas sp. FeS53a [JYFT]
96919
97004
+
Leu
CAA
[ENA]
¡û
>W1511530360
JYKO01000020
Gammaproteobacteria
Pseudomonas sp. LFM046 [JYKO]
370084
370169
+
Leu
CAA
[ENA]
¡û
>W1511534491
JYOA01000004
Gammaproteobacteria
Pseudomonas sp. 21 [JYOA]
304290
304375
+
Leu
CAA
[ENA]
¡û
>C161092036
CP015878
Gammaproteobacteria
Pseudomonas citronellolis SJTE-3 [CP015878]
5747825
5747910
+
Leu
CAA
[Ensembl]
¡û
>W121064857
AJMR01000024
Gammaproteobacteria
Pseudomonas furukawaii KF707 [AJMR]
29312
29397
+
Leu
CAA
[ENA]
¡û
>W1610060041
BCBL01000018
Gammaproteobacteria
Pseudomonas sp. NBRC 111135 [BCBL]
1484
1399
-
Leu
CAA
[ENA]
¡û
>W1610670100
LKAX01000007
Gammaproteobacteria
Pseudomonas sp. ADP [LKAX]
209506
209591
+
Leu
CAA
[ENA]
¡û
>W1610677525
LKJO01000153
Gammaproteobacteria
Pseudomonas citronellolis [LKJO]
12460
12375
-
Leu
CAA
[ENA]
¡û
>W1610679873
LKKN01000108
Gammaproteobacteria
Pseudomonas citronellolis [LKKN]
6723
6808
+
Leu
CAA
[ENA]
¡û
>W1611029562
LZDG02000043
Gammaproteobacteria
Pseudomonas sp. AU11447 [LZDG]
87877
87792
-
Leu
CAA
[ENA]
¡û
>W1611050073
LZYC01000028
Gammaproteobacteria
Pseudomonas sp. EGD-AKN5 [LZYC]
80527
80442
-
Leu
CAA
[ENA]
¡û
>W1611050866
MACM02000039
Gammaproteobacteria
Pseudomonas sp. AU12215 [MACM]
53926
53841
-
Leu
CAA
[ENA]
¡û
>W1710057164
BCBL01000018
Gammaproteobacteria
Pseudomonas sp. NBRC 111135 [BCBL]
1484
1399
-
Leu
CAA
[ENA]
¡û
>W1710075727
BCZY01000020
Gammaproteobacteria
Pseudomonas citronellolis NBRC 103043 [BCZY]
29453
29368
-
Leu
CAA
[ENA]
¡û
>W1710076298
BDAI01000013
Gammaproteobacteria
Pseudomonas nitroreducens NBRC 12694 [BDAI]
85584
85499
-
Leu
CAA
[ENA]
¡û
>W1710082308
BDGS01000001
Gammaproteobacteria
Pseudomonas humi CCA 1 [BDGS]
3556412
3556327
-
Leu
CAA
[ENA]
¡û
>W1710084449
BDMA01000017
Gammaproteobacteria
Pseudomonas resinovorans [BDMA]
127236
127321
+
Leu
CAA
[ENA]
¡û
>W1710517988
FNDS01000002
Gammaproteobacteria
Pseudomonas panipatensis [FNDS]
210111
210196
+
Leu
CAA
[ENA]
¡û
>W1710518554
FNEC01000010
Gammaproteobacteria
Pseudomonas delhiensis [FNEC]
49395
49480
+
Leu
CAA
[ENA]
¡û
>W1710555599
FOJP01000010
Gammaproteobacteria
Pseudomonas otitidis [FOJP]
151781
151696
-
Leu
CAA
[ENA]
¡û
>W1710558288
FOLS01000006
Gammaproteobacteria
Pseudomonas citronellolis [FOLS]
154461
154546
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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