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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154091 (130 seq.)
>W1710785345
LJHT01000111
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
53656
53741
+
Tyr
GTA
[ENA]
¡û
>W1710785469
LJHW01000046
Betaproteobacteria
beta proteobacterium AAP65 [LJHW]
36688
36773
+
Tyr
GTA
[ENA]
¡û
>W1710785643
LJIA01000018
Betaproteobacteria
beta proteobacterium AAP99 [LJIA]
178612
178697
+
Tyr
GTA
[ENA]
¡û
>W1710785770
LJID01000058
Betaproteobacteria
beta proteobacterium AAP121 [LJID]
484
399
-
Tyr
GTA
[ENA]
¡û
>W1710859994
LMCN01000010
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
116477
116562
+
Tyr
GTA
[ENA]
¡û
>W1710861270
LMDM01000008
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
592
507
-
Tyr
GTA
[ENA]
¡û
>W1710861865
LMDY01000013
Betaproteobacteria
Methylibium sp. Root1272 [LMDY]
1776
1691
-
Tyr
GTA
[ENA]
¡û
>W1710866407
LMHL01000006
Betaproteobacteria
Rhizobacter sp. Root16D2 [LMHL]
1710
1625
-
Tyr
GTA
[ENA]
¡û
>W1710877833
LMQL01000008
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
550
465
-
Tyr
GTA
[ENA]
¡û
>W1710893450
LNET01000108
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
641
556
-
Tyr
GTA
[ENA]
¡û
>W1711386270
MEFD01000011
Betaproteobacteria
Rubrivivax sp. SCN 71-131 [MEFD]
6936
7021
+
Tyr
GTA
[ENA]
¡û
>W1711387288
MEGM01000165
Betaproteobacteria
Rubrivivax sp. SCN 70-15 [MEGM]
13989
14074
+
Tyr
GTA
[ENA]
¡û
>W1711394926
MESO01000038
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_65_23 [MESO]
461
376
-
Tyr
GTA
[ENA]
¡û
>W1711453676
MIYM01000008
Betaproteobacteria
Hydrogenophaga sp. PML113 [MIYM]
217761
217846
+
Tyr
GTA
[ENA]
¡û
>W1711502448
MKSS01000016
Betaproteobacteria
Hydrogenophaga sp. 70-12 [MKSS]
25936
26021
+
Tyr
GTA
[ENA]
¡û
>W1711793356
MWLO01000124
Betaproteobacteria
Ideonella sp. A 288 A 288 [MWLO]
18348
18263
-
Tyr
GTA
[ENA]
¡û
>W1712049944
NFUT01000004
Betaproteobacteria
Hydrogenophaga sp. IBVHS2 [NFUT]
154338
154253
-
Tyr
GTA
[ENA]
¡û
>W1712103027
NIOG01000005
Betaproteobacteria
Roseateles terrae [NIOG]
470079
470164
+
Tyr
GTA
[ENA]
¡û
>C171060612
CP017311
Betaproteobacteria
Hydrogenophaga sp. PBC [CP017311]
4425360
4425275
-
Tyr
GTA
-
¡û
>W131178391
ARLO01000039
Betaproteobacteria
Curvibacter lanceolatus ATCC 14669 [ARLO]
1604
1519
-
Tyr
GTA
[ENA]
¡û
>W131214635
ATUI01000035
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
16541
16626
+
Tyr
GTA
[ENA]
¡û
>W131226942
AUET01000010
Betaproteobacteria
Comamonadaceae bacterium URHA0028 [AUET]
1347
1262
-
Tyr
GTA
[ENA]
¡û
>W131236696
AUMO01000043
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
30029
29944
-
Tyr
GTA
[ENA]
¡û
>C013927
CP000555
Betaproteobacteria
Methylibium petroleiphilum PM1 [CP000555]
3669046
3668961
-
Tyr
GTA
[Ensembl]
¡û
>WENV180013716
FMSI01139577
[FMSI] soil metagenome; Soil
449
364
-
Tyr
GTA
[ENA]
¢þ
>WENV180249519
OBEQ010204761
[OBEQ] groundwater metagenome; groundwater
530
445
-
Tyr
GTA
[ENA]
¢þ
>WENV180264013
OBEQ011528668
[OBEQ] groundwater metagenome; groundwater
851
936
+
Tyr
GTA
[ENA]
¢þ
>WENV180692338
OCZS010477186
[OCZS] soil metagenome; soil
340
255
-
Tyr
GTA
[ENA]
¢þ
>WENV181164670
OEIR01290665
[OEIR] soil metagenome; soil
100
185
+
Tyr
GTA
[ENA]
¢þ
>WENV181166658
OEIU01001034
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6761
6676
-
Tyr
GTA
[ENA]
¢þ
>WENV181167022
OEIU01006553
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
4835
4920
+
Tyr
GTA
[ENA]
¢þ
>WENV181169824
OEIV010011095
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2223
2308
+
Tyr
GTA
[ENA]
¢þ
>WENV181187889
OEOE01001274
[OEOE] activated sludge metagenome; Activated Sludge
1969
2054
+
Tyr
GTA
[ENA]
¢þ
>WENV181192235
OEPS010495984
[OEPS] soil metagenome; soil
70
155
+
Tyr
GTA
[ENA]
¢þ
>WENV181223034
OFDC01001333
[OFDC] hot springs metagenome; Water
12942
13027
+
Tyr
GTA
[ENA]
¢þ
>WENV181227260
OFDN01004425
[OFDN] hot springs metagenome; Water
6002
6087
+
Tyr
GTA
[ENA]
¢þ
>WENV181844178
OGVV01017596
[OGVV] freshwater metagenome; freshwater
385
470
+
Tyr
GTA
[ENA]
¢þ
>W141207231
AZND01000513
Betaproteobacteria
Methylibium sp. T29 [AZND]
485
400
-
Tyr
GTA
[ENA]
¡û
>W141212840
AZRA01000043
Betaproteobacteria
Sphaerotilus natans subsp. natans DSM 6575 [AZRA]
20364
20449
+
Tyr
GTA
[ENA]
¡û
>W141214268
AZSN01000356
Betaproteobacteria
Methylibium sp. T29-B [AZSN]
705
790
+
Tyr
GTA
[ENA]
¡û
>W141223630
BADL01000074
Betaproteobacteria
Ideonella sp. B508-1 [BADL]
4921
5006
+
Tyr
GTA
[ENA]
¡û
>W141234432
BAWN01000048
Betaproteobacteria
Serpentinimonas barnesii H1 [BAWN]
459
374
-
Tyr
GTA
[ENA]
¡û
>W141260614
CCAE010000006
Betaproteobacteria
Hydrogenophaga intermedia [CCAE]
144990
144905
-
Tyr
GTA
[ENA]
¡û
>W141276702
JADZ01000039
Betaproteobacteria
Curvibacter gracilis ATCC BAA-807 [JADZ]
923
838
-
Tyr
GTA
[ENA]
¡û
>C08005943
CP001013
Betaproteobacteria
Leptothrix cholodnii SP-6 [CP001013]
4348419
4348337
-
Tyr
GTA
[Ensembl]
¡û
>WENV183674588
ORJL011407129
[ORJL] groundwater metagenome; groundwater
365
280
-
Tyr
GTA
[ENA]
¢þ
>WENV183724501
PJQE01023215
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
462
377
-
Tyr
GTA
[ENA]
¢þ
>WENV170011305
APMI01054786
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3387
3472
+
Tyr
GTA
[ENA]
¢þ
>WENV170018750
BBPD01000658
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
323
238
-
Tyr
GTA
[ENA]
¢þ
>WENV170018910
BBPD01002033
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3957
4042
+
Tyr
GTA
[ENA]
¢þ
>WENV170019950
BBPE01001759
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
169
84
-
Tyr
GTA
[ENA]
¢þ
>WENV170020088
BBPE01002819
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
412
327
-
Tyr
GTA
[ENA]
¢þ
>WENV170639864
JFJP01010519
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
10513
10598
+
Tyr
GTA
[ENA]
¢þ
>WENV170651162
JRYF01001643
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
1059
1144
+
Tyr
GTA
[ENA]
¢þ
>WENV170658749
JUEG02000045
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
602
517
-
Tyr
GTA
[ENA]
¢þ
>WENV170660782
JXWU01029459
[JXWU] soil metagenome; rice field; organic control Plot
421
336
-
Tyr
GTA
[ENA]
¢þ
>WENV170710393
LNFM01001674
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
675
590
-
Tyr
GTA
[ENA]
¢þ
>WENV170713953
LNFM01048148
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1408
1323
-
Tyr
GTA
[ENA]
¢þ
>WENV170714588
LNFM01084147
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1456
1541
+
Tyr
GTA
[ENA]
¢þ
>WENV170714658
LNFM01092030
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
182
97
-
Tyr
GTA
[ENA]
¢þ
>WENV170714747
LNFM01097603
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4
89
+
Tyr
GTA
[ENA]
¢þ
>WENV170974992
MTKY01084765
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
482
567
+
Tyr
GTA
[ENA]
¢þ
>W09101377
AAEM01000002
Betaproteobacteria
Methylibium petroleiphilum PM1 [AAEM]
26881
26966
+
Tyr
GTA
[ENA]
¡û
>C181064515
CP022423
Betaproteobacteria
Vitreoscilla filiformis ATCC 15551 [CP022423]
841804
841889
+
Tyr
GTA
-
¡û
>C181176174
CP029210
Betaproteobacteria
Aquabacterium olei NBRC 110486 [CP029210]
191092
191177
+
Tyr
GTA
-
¡û
>C191064752
CP029606
Betaproteobacteria
Methylibium sp. Pch-M [CP029606]
1513631
1513546
-
Tyr
GTA
-
¡û
>W141727683
JNFG01000036
Betaproteobacteria
Caballeronia sordidicola [JNFG]
66041
65956
-
Tyr
GTA
[ENA]
¡û
>W1910175613
BJCL01000021
Betaproteobacteria
Rubrivivax pictus W35 [BJCL]
63378
63293
-
Tyr
GTA
[ENA]
¡û
>W1910699854
MERY01000292
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_63_9 [MERY]
2638
2723
+
Tyr
GTA
[ENA]
¡û
>W1910699917
MESA01000027
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_63_20 [MESA]
112994
113079
+
Tyr
GTA
[ENA]
¡û
>W1910700355
MESK01000112
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
113043
113128
+
Tyr
GTA
[ENA]
¡û
>W1910804556
MTHB01000141
Betaproteobacteria
Caballeronia sordidicola PAMC 26633 [MTHB]
431
516
+
Tyr
GTA
[ENA]
¡û
>W1911498119
OCSX01000001
Betaproteobacteria
Burkholderia sp. D7 [OCSX]
4490911
4490826
-
Tyr
GTA
[ENA]
¡û
>W1911740766
QUSW01000013
Betaproteobacteria
Albitalea terrae S-16 [QUSW]
30444
30529
+
Tyr
GTA
[ENA]
¡û
>W1911768559
QXGR01000016
Betaproteobacteria
Simplicispira lacusdiani CPCC 100842 [QXGR]
26449
26534
+
Tyr
GTA
[ENA]
¡û
>W1911775024
QXMG01000043
Betaproteobacteria
Caldimonas tepidiphila YIM 730274 [QXMG]
49651
49736
+
Tyr
GTA
[ENA]
¡û
>SRA1002285
SRR001308.347611
Metagenomic characterization of a wastewater treatment plant (SRP000180)
31
116
+
Tyr
GTA
[SRA]
>W1810354986
PVLQ01000021
Betaproteobacteria
Malikia granosa P1 [PVLQ]
53593
53678
+
Tyr
GTA
[ENA]
¡û
>W1810355057
PVLR01000028
Betaproteobacteria
Malikia spinosa 83 [PVLR]
50158
50243
+
Tyr
GTA
[ENA]
¡û
>W1810666678
QJOU01000117
Betaproteobacteria
Piscinibacter caeni MQ-18 [QJOU]
412
327
-
Tyr
GTA
[ENA]
¡û
>W1810756514
QPGB01000006
Betaproteobacteria
Parvibium lacunae KMB9 [QPGB]
148340
148255
-
Tyr
GTA
[ENA]
¡û
>W1810884639
QUMT01000003
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
708891
708806
-
Tyr
GTA
[ENA]
¡û
>W1810912346
QVLS01000006
Betaproteobacteria
Hydrogenophaga borbori LA-38 [QVLS]
463
378
-
Tyr
GTA
[ENA]
¡û
>C151002101
AP014568
Betaproteobacteria
Serpentinimonas raichei A1 [AP014568]
2185053
2184968
-
Tyr
GTA
[Ensembl]
¡û
>C151002145
AP014569
Betaproteobacteria
Serpentinimonas maccroryi B1 [AP014569]
2221148
2221063
-
Tyr
GTA
[Ensembl]
¡û
>WENV029380
AACY021194085
Marine microbial communities from Global Ocean Sampling (GOS)
729
644
-
Tyr
GTA
[ENA]
>C151081684
CP011371
Betaproteobacteria
Caldimonas brevitalea DSM 7029 [CP011371]
5762075
5761990
-
Tyr
GTA
[Ensembl]
¡û
>ENV09000437
ABSN01069149
Freshwater sediment metagenome lwFormaldehyde_C1
356
271
-
Tyr
GTA
[ENA]
¡û
>ENV09001399
ABSR01005039
Freshwater sediment metagenome lwMethylamine_C1
592
677
+
Tyr
GTA
[ENA]
¡û
>W1510021351
BBYR01000033
Betaproteobacteria
Piscinibacter sakaiensis 201-F6 [BBYR]
92226
92311
+
Tyr
GTA
[ENA]
¡û
>W1510766062
JANU01000004
Betaproteobacteria
Caenimonas sp. SL110 [JANU]
175363
175448
+
Tyr
GTA
[ENA]
¡û
>W1511348492
JRKM01000001
Betaproteobacteria
Aquabacterium sp. NJ1 [JRKM]
2939305
2939390
+
Tyr
GTA
[ENA]
¡û
>C11118985
CP000245
Betaproteobacteria
Ramlibacter tataouinensis TTB310 [CP000245]
3818952
3818867
-
Tyr
GTA
[Ensembl]
¡û
>W1511432403
JUGM01000015
Betaproteobacteria
Methylibium sp. CF059 [JUGM]
1583
1498
-
Tyr
GTA
[ENA]
¡û
>W1511433166
JUGZ01000042
Betaproteobacteria
Methylibium sp. CF468 [JUGZ]
780
695
-
Tyr
GTA
[ENA]
¡û
>W1511433175
JUHA01000002
Betaproteobacteria
Methylibium sp. YR605 [JUHA]
42182
42267
+
Tyr
GTA
[ENA]
¡û
>W1511552109
JZUE01000009
Betaproteobacteria
Aquincola tertiaricarbonis MIMtkpLc11 [JZUE]
252377
252462
+
Tyr
GTA
[ENA]
¡û
>W11150912
AEWG01000029
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 [AEWG]
413
328
-
Tyr
GTA
[ENA]
¡û
>W1511705372
LGRD01000018
Betaproteobacteria
Methylibium sp. NZG [LGRD]
291093
291008
-
Tyr
GTA
[ENA]
¡û
>W1511705392
LGRD01000032
Betaproteobacteria
Methylibium sp. NZG [LGRD]
28865
28950
+
Tyr
GTA
[ENA]
¡û
>W1511706157
LGTG01000194
Betaproteobacteria
Candidatus Burkholderia crenata crenata UZHbot9 [LGTG]
106
191
+
Tyr
GTA
[ENA]
¡û
>C121001082
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
330419
330504
+
Tyr
GTA
[Ensembl]
¡û
>C161029922
CP010951
Betaproteobacteria
Ramlibacter tataouinensis 5-10 [CP010951]
2379678
2379763
+
Tyr
GTA
[Ensembl]
¡û
>C161060262
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
626469
626554
+
Tyr
GTA
[Ensembl]
¡û
>W121036326
AHLZ01000001
Betaproteobacteria
Burkholderiales bacterium JOSHI_001 [AHLZ]
378362
378447
+
Tyr
GTA
[ENA]
¡û
>W121060081
AJFF01000039
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
436
351
-
Tyr
GTA
[ENA]
¡û
>W121070139
AJWL01000134
Betaproteobacteria
Hydrogenophaga sp. PBC [AJWL]
386
301
-
Tyr
GTA
[ENA]
¡û
>W1610002264
AEJF01000098
Betaproteobacteria
Caballeronia mineralivorans PML1(12) [AEJF]
95
180
+
Tyr
GTA
[ENA]
¡û
>W1610070235
BCTC01000015
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
92375
92460
+
Tyr
GTA
[ENA]
¡û
>W1610070528
BCTI01000005
Betaproteobacteria
Hydrogenophaga intermedia NBRC 102510 [BCTI]
367
282
-
Tyr
GTA
[ENA]
¡û
>W1610206822
FCOK02000237
Betaproteobacteria
Caballeronia udeis [FCOK]
426
341
-
Tyr
GTA
[ENA]
¡û
>W1610604887
LFRI01000245
Betaproteobacteria
Aquabacterium parvum [LFRI]
59435
59350
-
Tyr
GTA
[ENA]
¡û
>W1610649151
LJHT01000111
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
53656
53741
+
Tyr
GTA
[ENA]
¡û
>W1610649275
LJHW01000046
Betaproteobacteria
beta proteobacterium AAP65 [LJHW]
36688
36773
+
Tyr
GTA
[ENA]
¡û
>W1610649449
LJIA01000018
Betaproteobacteria
beta proteobacterium AAP99 [LJIA]
178612
178697
+
Tyr
GTA
[ENA]
¡û
>W1610649576
LJID01000058
Betaproteobacteria
beta proteobacterium AAP121 [LJID]
484
399
-
Tyr
GTA
[ENA]
¡û
>W1610722340
LMCN01000010
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
116477
116562
+
Tyr
GTA
[ENA]
¡û
>W1610723616
LMDM01000008
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
592
507
-
Tyr
GTA
[ENA]
¡û
>W1610724211
LMDY01000013
Betaproteobacteria
Methylibium sp. Root1272 [LMDY]
1776
1691
-
Tyr
GTA
[ENA]
¡û
>W1610728753
LMHL01000006
Betaproteobacteria
Rhizobacter sp. Root16D2 [LMHL]
1710
1625
-
Tyr
GTA
[ENA]
¡û
>W1610740179
LMQL01000008
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
550
465
-
Tyr
GTA
[ENA]
¡û
>W1610753716
LNET01000108
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
641
556
-
Tyr
GTA
[ENA]
¡û
>W1710003703
AEJF01000098
Betaproteobacteria
Caballeronia mineralivorans PML1(12) [AEJF]
95
180
+
Tyr
GTA
[ENA]
¡û
>W1710067608
BCTC01000015
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
92375
92460
+
Tyr
GTA
[ENA]
¡û
>W1710067901
BCTI01000005
Betaproteobacteria
Hydrogenophaga intermedia NBRC 102510 [BCTI]
367
282
-
Tyr
GTA
[ENA]
¡û
>W1710207572
FCOK02000237
Betaproteobacteria
Caballeronia udeis [FCOK]
426
341
-
Tyr
GTA
[ENA]
¡û
>W1710544479
FOAV01000010
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
108960
108875
-
Tyr
GTA
[ENA]
¡û
>W1710592678
FRCQ01000024
Betaproteobacteria
Rhizobacter sp. OV335 [FRCQ]
1058
973
-
Tyr
GTA
[ENA]
¡û
>W1710597144
FTMZ01000020
Betaproteobacteria
Sphaerotilus natans [FTMZ]
763
678
-
Tyr
GTA
[ENA]
¡û
>W1710726330
LFRI01000245
Betaproteobacteria
Aquabacterium parvum [LFRI]
59435
59350
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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