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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154121 (69 seq.)
>W1710806122
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
1705771
1705847
+
Asp
GTC
[ENA]
¡û
>W1710806123
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
1710583
1710659
+
Asp
GTC
[ENA]
¡û
>W131182267
ARQF01000020
Thermodesulfobacteriota
Halodesulfovibrio aestuarii subsp. aestuarii DSM 17919 = ATCC 29578 [ARQF]
720977
720901
-
Asp
GTC
[ENA]
¡û
>W131182269
ARQF01000020
Thermodesulfobacteriota
Halodesulfovibrio aestuarii subsp. aestuarii DSM 17919 = ATCC 29578 [ARQF]
718738
718662
-
Asp
GTC
[ENA]
¡û
>W131182272
ARQF01000020
Thermodesulfobacteriota
Halodesulfovibrio aestuarii subsp. aestuarii DSM 17919 = ATCC 29578 [ARQF]
717521
717445
-
Asp
GTC
[ENA]
¡û
>W131235970
AULY01000007
Thermodesulfobacteriota
Halodesulfovibrio aestuarii DSM 10141 [AULY]
454881
454805
-
Asp
GTC
[ENA]
¡û
>W131235971
AULY01000007
Thermodesulfobacteriota
Halodesulfovibrio aestuarii DSM 10141 [AULY]
452598
452522
-
Asp
GTC
[ENA]
¡û
>W131235974
AULY01000007
Thermodesulfobacteriota
Halodesulfovibrio aestuarii DSM 10141 [AULY]
451382
451306
-
Asp
GTC
[ENA]
¡û
>WENV180042865
LQAG01008609
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
421
345
-
Asp
GTC
[ENA]
¢þ
>WENV180043676
LQAI01006630
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
954
878
-
Asp
GTC
[ENA]
¢þ
>WENV180044004
LQAJ01000200
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
8588
8512
-
Asp
GTC
[ENA]
¢þ
>WENV180044006
LQAJ01000200
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
8025
7949
-
Asp
GTC
[ENA]
¢þ
>WENV180297774
OBJA01081588
[OBJA] soil metagenome; sediment, water from around vicinity
668
592
-
Asp
GTC
[ENA]
¢þ
>WENV180316869
OBKJ01000460
[OBKJ] metagenome; hydrothermal vent
572
496
-
Asp
GTC
[ENA]
¢þ
>WENV180332336
OBLD01000161
[OBLD] metagenome; water
6298
6374
+
Asp
GTC
[ENA]
¢þ
>WENV180332392
OBLD01002468
[OBLD] metagenome; water
70
146
+
Asp
GTC
[ENA]
¢þ
>WENV180332441
OBLD01009047
[OBLD] metagenome; water
557
481
-
Asp
GTC
[ENA]
¢þ
>WENV180581729
OCMK01055499
[OCMK] metagenome; diffuse fluid
141
217
+
Asp
GTC
[ENA]
¢þ
>WENV180582214
OCMO01016220
[OCMO] metagenome; diffuse fluid
309
233
-
Asp
GTC
[ENA]
¢þ
>WENV181206672
OFAW01001553
[OFAW] metagenome; hydrothermal vent
365
289
-
Asp
GTC
[ENA]
¢þ
>WENV181207100
OFAY01000550
[OFAY] metagenome; hydrothermal vent
191
115
-
Asp
GTC
[ENA]
¢þ
>WENV181207684
OFAZ01014509
[OFAZ] metagenome; hydrothermal vent
191
115
-
Asp
GTC
[ENA]
¢þ
>WENV181207884
OFBA01001869
[OFBA] metagenome; hydrothermal vent
191
115
-
Asp
GTC
[ENA]
¢þ
>WENV181208202
OFBB01000428
[OFBB] metagenome; hydrothermal vent
4002
3926
-
Asp
GTC
[ENA]
¢þ
>WENV181208656
OFBC01001058
[OFBC] metagenome; hydrothermal vent
1073
997
-
Asp
GTC
[ENA]
¢þ
>WENV181223858
OFDD01001535
[OFDD] metagenome; hydrothermal vent
2180
2256
+
Asp
GTC
[ENA]
¢þ
>WENV181224212
OFDE01000989
[OFDE] metagenome; hydrothermal vent
1609
1685
+
Asp
GTC
[ENA]
¢þ
>WENV181224693
OFDG01001358
[OFDG] metagenome; hydrothermal vent
610
534
-
Asp
GTC
[ENA]
¢þ
>WENV181225423
OFDI01001225
[OFDI] metagenome; hydrothermal vent
968
892
-
Asp
GTC
[ENA]
¢þ
>WENV183708178
PDWI01013596
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
13
89
+
Asp
GTC
[ENA]
¢þ
>WENV183709175
PDWI01025027
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
87
11
-
Asp
GTC
[ENA]
¢þ
>WENV183746870
PPCM01000028
[PPCM] marine sediment metagenome; marine sediment
115012
115088
+
Asp
GTC
[ENA]
¢þ
>WENV183747226
PPCM01000476
[PPCM] marine sediment metagenome; marine sediment
11595
11519
-
Asp
GTC
[ENA]
¢þ
>WENV183747653
PPCM01013850
[PPCM] marine sediment metagenome; marine sediment
1005
1081
+
Asp
GTC
[ENA]
¢þ
>WENV183747655
PPCM01013986
[PPCM] marine sediment metagenome; marine sediment
361
437
+
Asp
GTC
[ENA]
¢þ
>WENV183747688
PPCM01017481
[PPCM] marine sediment metagenome; marine sediment
856
780
-
Asp
GTC
[ENA]
¢þ
>WENV183747778
PPCM01036858
[PPCM] marine sediment metagenome; marine sediment
7
83
+
Asp
GTC
[ENA]
¢þ
>WENV170419554
CEUM01132036
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
59840
59764
-
Asp
GTC
[ENA]
¢þ
>WENV170438574
CEUU01189013
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
563
487
-
Asp
GTC
[ENA]
¢þ
>WENV170440566
CEUV01110953
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
528
452
-
Asp
GTC
[ENA]
¢þ
>WENV170469225
CEVF01095096
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
298
374
+
Asp
GTC
[ENA]
¢þ
>WENV170645371
JMSV01000972
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
1734
1658
-
Asp
GTC
[ENA]
¢þ
>WENV170645404
JMSV01002866
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
563
639
+
Asp
GTC
[ENA]
¢þ
>WENV170645460
JMSV01006253
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
218
294
+
Asp
GTC
[ENA]
¢þ
>WENV170900851
MDTD01160475
[MDTD] marine metagenome; seawater
60956
60880
-
Asp
GTC
[ENA]
¢þ
>C181227008
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
1446084
1446008
-
Asp
GTC
-
¡û
>C191000270
AP017378
Thermodesulfobacteriota
Desulfovibrio ferrophilus IS5 [AP017378]
1550357
1550281
-
Asp
GTC
-
¡û
>C191000271
AP017378
Thermodesulfobacteriota
Desulfovibrio ferrophilus IS5 [AP017378]
1550087
1550011
-
Asp
GTC
-
¡û
>W09118009
ACCN01000005
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
106527
106451
-
Asp
GTC
[ENA]
¡û
>W09118011
ACCN01000005
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
101798
101722
-
Asp
GTC
[ENA]
¡û
>C09104235
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3624784
3624860
+
Asp
GTC
[Ensembl]
¡û
>C09104237
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3629513
3629589
+
Asp
GTC
[Ensembl]
¡û
>W1911738016
QTZO01000005
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
83378
83454
+
Asp
GTC
[ENA]
¡û
>C131017932
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
2856042
2856118
+
Asp
GTC
[Ensembl]
¡û
>W1610550463
JXMS01000010
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
96420
96344
-
Asp
GTC
[ENA]
¡û
>W1610550465
JXMS01000010
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
95073
94997
-
Asp
GTC
[ENA]
¡û
>W1610550466
JXMS01000010
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
94934
94858
-
Asp
GTC
[ENA]
¡û
>W1610550470
JXMS01000010
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
94067
93991
-
Asp
GTC
[ENA]
¡û
>W1710588848
FQZR01000003
Thermodesulfobacteriota
Halodesulfovibrio aestuarii desulfuricans [FQZR]
1095
1171
+
Asp
GTC
[ENA]
¡û
>W1710588876
FQZR01000005
Thermodesulfobacteriota
Halodesulfovibrio aestuarii desulfuricans [FQZR]
2227
2151
-
Asp
GTC
[ENA]
¡û
>W1710594454
FSRG01000004
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
342235
342311
+
Asp
GTC
[ENA]
¡û
>W1710594456
FSRG01000004
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
343434
343510
+
Asp
GTC
[ENA]
¡û
>W1710594457
FSRG01000004
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
343573
343649
+
Asp
GTC
[ENA]
¡û
>W1710594460
FSRG01000004
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
344796
344872
+
Asp
GTC
[ENA]
¡û
>W1710594463
FSRG01000004
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
346019
346095
+
Asp
GTC
[ENA]
¡û
>W1710660188
JXMS01000010
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
96420
96344
-
Asp
GTC
[ENA]
¡û
>W1710660190
JXMS01000010
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
95073
94997
-
Asp
GTC
[ENA]
¡û
>W1710660191
JXMS01000010
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
94934
94858
-
Asp
GTC
[ENA]
¡û
>W1710660195
JXMS01000010
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
94067
93991
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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