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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154338 (81 seq.)
>W1710881965
LMTK01000078
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LMTK]
155571
155656
+
Leu
CAA
[ENA]
¡û
>W1711071589
LSGV01000047
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGV]
154701
154786
+
Leu
CAA
[ENA]
¡û
>W1711071667
LSGW01000071
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGW]
5421
5336
-
Leu
CAA
[ENA]
¡û
>W1711071766
LSGX01000076
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGX]
1936
1851
-
Leu
CAA
[ENA]
¡û
>W1711121136
LUHO01000156
Gammaproteobacteria
Aeromonas salmonicida [LUHO]
2157
2072
-
Leu
CAA
[ENA]
¡û
>W1711121254
LUHP01000147
Gammaproteobacteria
Aeromonas salmonicida [LUHP]
1929
1844
-
Leu
CAA
[ENA]
¡û
>W1711262171
LYXO01000063
Gammaproteobacteria
Aeromonas piscicola [LYXO]
11990
12075
+
Leu
CAA
[ENA]
¡û
>W131044060
AMQG01000065
Gammaproteobacteria
Aeromonas salmonicida subsp. achromogenes AS03 [AMQG]
22137
22222
+
Leu
CAA
[ENA]
¡û
>W1711429184
MIIM01000093
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIM]
2617
2532
-
Leu
CAA
[ENA]
¡û
>W1711429287
MIIN01000050
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIN]
154967
155052
+
Leu
CAA
[ENA]
¡û
>W1711429330
MIIO01000005
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIO]
140800
140885
+
Leu
CAA
[ENA]
¡û
>W1711429453
MIIP01000061
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIP]
3909
3824
-
Leu
CAA
[ENA]
¡û
>W1711429608
MIIQ01000069
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIQ]
154999
155084
+
Leu
CAA
[ENA]
¡û
>W1711429708
MIIR01000062
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIR]
154999
155084
+
Leu
CAA
[ENA]
¡û
>W1711429803
MIIS01000063
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIS]
154967
155052
+
Leu
CAA
[ENA]
¡û
>W1711429907
MIIT01000055
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIT]
154967
155052
+
Leu
CAA
[ENA]
¡û
>W1711429946
MIIU01000025
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIU]
101355
101440
+
Leu
CAA
[ENA]
¡û
>W1711487188
MKFU01000005
Gammaproteobacteria
Aeromonas sobria [MKFU]
90379
90294
-
Leu
CAA
[ENA]
¡û
>C171121020
CP021654
Gammaproteobacteria
Aeromonas salmonicida O23A [CP021654]
4544457
4544542
+
Leu
CAA
-
¡û
>C001092
CP000644
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida A449 [CP000644]
4119115
4119200
+
Leu
CAA
[Ensembl]
¡û
>W141067071
ARYZ01000101
Gammaproteobacteria
Aeromonas salmonicida subsp. pectinolytica 34mel [ARYZ]
2185
2100
-
Leu
CAA
[ENA]
¡û
>W141234614
BAWQ01000014
Gammaproteobacteria
Aeromonas salmonicida subsp. masoucida NBRC 13784 [BAWQ]
1682
1597
-
Leu
CAA
[ENA]
¡û
>C181023872
CP017143
Gammaproteobacteria
Aeromonas salmonicida subsp. masoucida RFAS1 [CP017143]
147358
147273
-
Leu
CAA
-
¡û
>C181060111
CP022175
Gammaproteobacteria
Aeromonas salmonicida S121 [CP022175]
3955397
3955312
-
Leu
CAA
-
¡û
>C181060230
CP022181
Gammaproteobacteria
Aeromonas salmonicida S44 [CP022181]
3947443
3947358
-
Leu
CAA
-
¡û
>C181060349
CP022186
Gammaproteobacteria
Aeromonas salmonicida S68 [CP022186]
3962171
3962086
-
Leu
CAA
-
¡û
>C181064584
CP022426
Gammaproteobacteria
Aeromonas salmonicida subsp. pectinolytica 34mel [CP022426]
564945
565030
+
Leu
CAA
-
¡û
>C181068385
CP022550
Gammaproteobacteria
Aeromonas salmonicida A527 [CP022550]
4123040
4122955
-
Leu
CAA
-
¡û
>C181091020
CP023817
Gammaproteobacteria
Aeromonas sp. CU5 [CP023817]
3421522
3421437
-
Leu
CAA
-
¡û
>C181091096
CP023818
Gammaproteobacteria
Aeromonas sp. CA23 [CP023818]
1755533
1755618
+
Leu
CAA
-
¡û
>C181129291
CP026217
Gammaproteobacteria
Aeromonas sp. ASNIH4 [CP026217]
4038746
4038661
-
Leu
CAA
-
¡û
>C191050042
CP027000
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 01-B526 [CP027000]
4039652
4039567
-
Leu
CAA
-
¡û
>W141810764
JPWL01000038
Gammaproteobacteria
Aeromonas bestiarum salmonicida [JPWL]
24918
24833
-
Leu
CAA
[ENA]
¡û
>W1910619958
LJZX01000028
Gammaproteobacteria
Aeromonas sobria JF2635 [LJZX]
89239
89324
+
Leu
CAA
[ENA]
¡û
>W1910634959
LMTT01000051
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida M22710-11 [LMTT]
154991
155076
+
Leu
CAA
[ENA]
¡û
>W1910635612
LNGB01000076
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida m11743-09 [LNGB]
154991
155076
+
Leu
CAA
[ENA]
¡û
>W1911178470
NQMJ01000005
Gammaproteobacteria
Aeromonas salmonicida M18076-11 [NQMJ]
97209
97294
+
Leu
CAA
[ENA]
¡û
>W1911178793
NQMM01000053
Gammaproteobacteria
Aeromonas sobria TM18 [NQMM]
125716
125631
-
Leu
CAA
[ENA]
¡û
>W1911385879
NVQH01000003
Gammaproteobacteria
Aeromonas salmonicida ECFood+05 [NVQH]
211307
211392
+
Leu
CAA
[ENA]
¡û
>W1911420630
NXBT01000008
Gammaproteobacteria
Aeromonas salmonicida Z5-5 [NXBT]
59291
59206
-
Leu
CAA
[ENA]
¡û
>W1911621044
PQLM01000007
Gammaproteobacteria
Aeromonas sp. ASNIH6 [PQLM]
94864
94779
-
Leu
CAA
[ENA]
¡û
>W1911630348
PSZI01000018
Gammaproteobacteria
Aeromonas salmonicida AJ83 [PSZI]
68878
68793
-
Leu
CAA
[ENA]
¡û
>W1911630385
PSZJ01000003
Gammaproteobacteria
Aeromonas salmonicida A308 [PSZJ]
58917
58832
-
Leu
CAA
[ENA]
¡û
>W1911630561
PSZK01000011
Gammaproteobacteria
Aeromonas salmonicida 947C [PSZK]
63000
62915
-
Leu
CAA
[ENA]
¡û
>W1810090455
PGGC01000044
Gammaproteobacteria
Aeromonas cavernicola MDC 2508 [PGGC]
68022
67937
-
Leu
CAA
[ENA]
¡û
>W1810242252
PPUW01000011
Gammaproteobacteria
Aeromonas veronii ML09-123 [PPUW]
102134
102049
-
Leu
CAA
[ENA]
¡û
>W1810259601
PQLL01000007
Gammaproteobacteria
Aeromonas hydrophila AHNIH2 [PQLL]
56370
56455
+
Leu
CAA
[ENA]
¡û
>W1810474913
QAIP01000314
Gammaproteobacteria
Aeromonas sp. HMWF014 [QAIP]
17152
17067
-
Leu
CAA
[ENA]
¡û
>W1810693635
QLLM01000012
Gammaproteobacteria
Aeromonas salmonicida 17 [QLLM]
86063
85978
-
Leu
CAA
[ENA]
¡û
>C151074494
CP010947
Gammaproteobacteria
Aeromonas hydrophila AL06-06 [CP010947]
4231695
4231610
-
Leu
CAA
[Ensembl]
¡û
>W1510064766
CDBI01000030
Gammaproteobacteria
Aeromonas popoffii CIP 105493 [CDBI]
17807
17722
-
Leu
CAA
[ENA]
¡û
>W1510065011
CDBL01000004
Gammaproteobacteria
Aeromonas piscicola LMG 24783 [CDBL]
93211
93126
-
Leu
CAA
[ENA]
¡û
>W1510065940
CDBW01000013
Gammaproteobacteria
Aeromonas sobria CECT 4245 [CDBW]
90397
90312
-
Leu
CAA
[ENA]
¡û
>W1510067409
CDDA01000006
Gammaproteobacteria
Aeromonas bestiarum CECT 4227 [CDDA]
243625
243710
+
Leu
CAA
[ENA]
¡û
>W1510068844
CDDW01000119
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida CIP 103209 [CDDW]
5421
5336
-
Leu
CAA
[ENA]
¡û
>W1511359789
JRYV01000061
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 2009-144K3 [JRYV]
3918
3833
-
Leu
CAA
[ENA]
¡û
>W1511359897
JRYW01000008
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 2004-05MF26 [JRYW]
155015
155100
+
Leu
CAA
[ENA]
¡û
>W1511511428
JXTA01000006
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida JF3224 [JXTA]
154663
154748
+
Leu
CAA
[ENA]
¡û
>C161042321
CP012504
Gammaproteobacteria
Aeromonas veronii TH0426 [CP012504]
517737
517822
+
Leu
CAA
[Ensembl]
¡û
>W121021188
AGVO01000049
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 01-B526 [AGVO]
1916
1831
-
Leu
CAA
[ENA]
¡û
>W121124807
BAFL01000033
Gammaproteobacteria
Aeromonas dhakensis AAK1 [BAFL]
12103
12188
+
Leu
CAA
[ENA]
¡û
>W1610461069
FKKY01000012
Gammaproteobacteria
Aeromonas sp. EERV15 [FKKY]
91060
91145
+
Leu
CAA
[ENA]
¡û
>W1610461176
FKKY02000012
Gammaproteobacteria
Aeromonas sp. EERV15 [FKKY]
91060
91145
+
Leu
CAA
[ENA]
¡û
>W1610551030
JYFF01000005
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFF]
154967
155052
+
Leu
CAA
[ENA]
¡û
>W1610551132
JYFG01000005
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFG]
154967
155052
+
Leu
CAA
[ENA]
¡û
>W1610574819
JZTF01000014
Gammaproteobacteria
Aeromonas salmonicida [JZTF]
1643
1558
-
Leu
CAA
[ENA]
¡û
>W1610574961
JZTG01000013
Gammaproteobacteria
Aeromonas salmonicida [JZTG]
78181
78096
-
Leu
CAA
[ENA]
¡û
>W1610575029
JZTH01000011
Gammaproteobacteria
Aeromonas salmonicida [JZTH]
106235
106150
-
Leu
CAA
[ENA]
¡û
>W1610575157
JZTI01000056
Gammaproteobacteria
Aeromonas salmonicida subsp. smithia [JZTI]
23834
23919
+
Leu
CAA
[ENA]
¡û
>WENV073776
AACY023937393
Marine microbial communities from Global Ocean Sampling (GOS)
296
209
-
Leu
CAA
[ENA]
>W1610910849
LSGV01000047
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGV]
154701
154786
+
Leu
CAA
[ENA]
¡û
>W1610910927
LSGW01000071
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGW]
5421
5336
-
Leu
CAA
[ENA]
¡û
>W1610911026
LSGX01000076
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGX]
1936
1851
-
Leu
CAA
[ENA]
¡û
>W1611024094
LYXO01000063
Gammaproteobacteria
Aeromonas piscicola [LYXO]
11990
12075
+
Leu
CAA
[ENA]
¡û
>W1710661303
JYFF01000005
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFF]
154967
155052
+
Leu
CAA
[ENA]
¡û
>W1710661405
JYFG01000005
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFG]
154967
155052
+
Leu
CAA
[ENA]
¡û
>W1710692054
JZTF01000014
Gammaproteobacteria
Aeromonas salmonicida [JZTF]
1643
1558
-
Leu
CAA
[ENA]
¡û
>W1710692196
JZTG01000013
Gammaproteobacteria
Aeromonas salmonicida [JZTG]
78181
78096
-
Leu
CAA
[ENA]
¡û
>W1710692264
JZTH01000011
Gammaproteobacteria
Aeromonas salmonicida [JZTH]
106235
106150
-
Leu
CAA
[ENA]
¡û
>W1710692392
JZTI01000056
Gammaproteobacteria
Aeromonas salmonicida subsp. smithia [JZTI]
23834
23919
+
Leu
CAA
[ENA]
¡û
>W1710694445
LAIS01000382
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LAIS]
206
291
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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