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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154551 (46 seq.)
>A171000731
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
1671452
1671527
+
Cys
GCA
-
¡û
>A171006683
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
195700
195776
+
Cys
GCA
-
¡û
>A171006725
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
196377
196452
+
Cys
GCA
-
¡û
>A171006912
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
1276254
1276329
+
Cys
GCA
-
¡û
>A171007256
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
1353783
1353707
-
Cys
GCA
-
¡û
>A171007429
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
39537
39612
+
Cys
GCA
-
¡û
>At0766
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
2637802
2637877
+
Cys
GCA
[Ensembl]
¡û
>WENV170703015
LKMJ01005558
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
195
270
+
Cys
GCA
[ENA]
¢þ
>W1910006933
BBMP01000022
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
272889
272814
-
Cys
GCA
[ENA]
¡û
>W1910175092
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
1396377
1396302
-
Cys
GCA
[ENA]
¡û
>W1910193776
CVUA01000001
Euryarchaeota
Halolamina sediminis halo-7 halo7 [CVUA]
138650
138725
+
Cys
GCA
[ENA]
¡û
>W1910227031
FNHL01000004
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
437085
437010
-
Cys
GCA
[ENA]
¡û
>W1910227072
FNIA01000030
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
3563
3638
+
Cys
GCA
[ENA]
¡û
>W1910227157
FNLC01000005
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
423
498
+
Cys
GCA
[ENA]
¡û
>W1910228405
FNOF01000034
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
14857
14781
-
Cys
GCA
[ENA]
¡û
>W1910229336
FNWL01000003
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
5506
5581
+
Cys
GCA
[ENA]
¡û
>W1910230426
FORO01000002
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
206204
206129
-
Cys
GCA
[ENA]
¡û
>W1910230465
FOTC01000001
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
525
600
+
Cys
GCA
[ENA]
¡û
>W1910340548
FTNR01000006
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
249815
249740
-
Cys
GCA
[ENA]
¡û
>W1910572580
JMIP02000023
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
33526
33601
+
Cys
GCA
[ENA]
¡û
>W1910575895
JROF01000035
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
380
455
+
Cys
GCA
[ENA]
¡û
>W1910617618
LIUF01000008
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
1662
1737
+
Cys
GCA
[ENA]
¡û
>W1911493168
OBEJ01000008
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
170
246
+
Cys
GCA
[ENA]
¡û
>W1911591338
PKKI01000027
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
5081
5006
-
Cys
GCA
[ENA]
¡û
>W1911709183
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
1322416
1322340
-
Cys
GCA
[ENA]
¡û
>W1911709460
QPLN01000002
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
974
1049
+
Cys
GCA
[ENA]
¡û
>W1911709888
QPMJ01000003
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
433
508
+
Cys
GCA
[ENA]
¡û
>W1911770062
QXIK01000024
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
32065
31990
-
Cys
GCA
[ENA]
¡û
>C151003927
CP002988
Euryarchaeota
halophilic archaeon DL31 [CP002988]
2126848
2126773
-
Cys
GCA
[Ensembl]
¡û
>W1610003253
AFNT02000002
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
68304
68382
+
Cys
GCA
[ENA]
¡û
>W1610005332
AJRK01000365
Euryarchaeota
Halococcus hamelinensis 100A6 [AJRK]
5645
5720
+
Cys
GCA
[ENA]
¡û
>W1610005909
ALJD01000009
Euryarchaeota
Halogranum salarium B-1 [ALJD]
588082
588007
-
Cys
GCA
[ENA]
¡û
>W1610011903
AOHW01000009
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
169
244
+
Cys
GCA
[ENA]
¡û
>W1610012111
AOIB01000010
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
25578
25503
-
Cys
GCA
[ENA]
¡û
>W1610012279
AOII01000009
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
470
545
+
Cys
GCA
[ENA]
¡û
>W1610012342
AOIJ01000049
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
224760
224684
-
Cys
GCA
[ENA]
¡û
>W1610012471
AOIM01000019
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
45901
45825
-
Cys
GCA
[ENA]
¡û
>W1610014201
AOLR01000024
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
6555
6480
-
Cys
GCA
[ENA]
¡û
>W1610014324
AOLX01000019
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
11106
11031
-
Cys
GCA
[ENA]
¡û
>W1610014404
AOLZ01000004
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
28978
28903
-
Cys
GCA
[ENA]
¡û
>W1610014678
AOMF01000156
Euryarchaeota
Halococcus thailandensis JCM 13552 [AOMF]
2055
2133
+
Cys
GCA
[ENA]
¡û
>W1610019026
ARPH01000005
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
183
258
+
Cys
GCA
[ENA]
¡û
>W1610061908
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
2544893
2544968
+
Cys
GCA
[ENA]
¡û
>W1610085173
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
198543
198468
-
Cys
GCA
[ENA]
¡û
>W1610085212
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
198158
198083
-
Cys
GCA
[ENA]
¡û
>W1610925034
LTAZ01000003
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
279465
279540
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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