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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154573 (9 seq.)
>WENV180393947
OBPR01026709
[OBPR] marine metagenome; ENVO:00002042
529
453
-
Arg
TCG
[ENA]
¢þ
>WENV181120483
OEFK01003885
[OEFK] marine metagenome; ENVO:00002010 seawater
533
457
-
Arg
TCG
[ENA]
¢þ
>WENV170163508
CEOM01139936
[CEOM] marine metagenome genome assembly TARA_004_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
192
268
+
Arg
TCG
[ENA]
¢þ
>WENV170167978
CEOP01051062
[CEOP] marine metagenome genome assembly TARA_009_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
863
787
-
Arg
TCG
[ENA]
¢þ
>WENV170390954
CEUA01181272
[CEUA] marine metagenome genome assembly TARA_132_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
303
227
-
Arg
TCG
[ENA]
¢þ
>WENV170799790
MDSV01219501
[MDSV] marine metagenome; seawater
2879
2955
+
Arg
TCG
[ENA]
¢þ
>WENV170809028
MDSW01125070
[MDSW] marine metagenome; seawater
2322
2398
+
Arg
TCG
[ENA]
¢þ
>WENV170809590
MDSW01134938
[MDSW] marine metagenome; seawater
1106
1182
+
Arg
TCG
[ENA]
¢þ
>WENV170847009
MDTA01052574
[MDTA] marine metagenome; seawater
2683
2607
-
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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