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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154579 (31 seq.)
>W1711229385
LXYJ01000055
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
31378
31302
-
His
GTG
[ENA]
¡û
>C171092118
CP019312
Alphaproteobacteria
Tateyamaria omphalii DOK1-4 [CP019312]
1929063
1928987
-
His
GTG
-
¡û
>C011086
CP000264
Alphaproteobacteria
Jannaschia sp. CCS1 [CP000264]
3456446
3456370
-
His
GTG
[Ensembl]
¡û
>w020863
AAVE01000004
Alphaproteobacteria
Dinoroseobacter shibae DFL 12 [AAVE]
386837
386915
+
His
GTG
[ENA]
¡û
>WENV180358505
OBNP01080759
[OBNP] marine metagenome; seawater
272
348
+
His
GTG
[ENA]
¢þ
>WENV180393118
OBPP01079767
[OBPP] marine metagenome; ENVO:00002042
245
321
+
His
GTG
[ENA]
¢þ
>WENV180393996
OBPR01035529
[OBPR] marine metagenome; ENVO:00002042
192
268
+
His
GTG
[ENA]
¢þ
>W141043745
AMGO01000001
Alphaproteobacteria
Oceaniovalibus guishaninsula JLT2003 [AMGO]
75784
75860
+
His
GTG
[ENA]
¡û
>WENV181120825
OEFK01073994
[OEFK] marine metagenome; ENVO:00002010 seawater
116
192
+
His
GTG
[ENA]
¢þ
>C08004171
CP000830
Alphaproteobacteria
Dinoroseobacter shibae DFL 12 = DSM 16493 [CP000830]
785598
785674
+
His
GTG
[Ensembl]
¡û
>WENV182560836
OJDV01000036
[OJDV] seawater metagenome; Sea water
109920
109996
+
His
GTG
[ENA]
¢þ
>WENV183056683
OLHJ01004496
[OLHJ] seawater metagenome; Sea water
2613
2537
-
His
GTG
[ENA]
¢þ
>WENV183065189
OLII01048136
[OLII] seawater metagenome; Sea water
95
171
+
His
GTG
[ENA]
¢þ
>WENV183715066
PDWI01219918
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
142
218
+
His
GTG
[ENA]
¢þ
>WENV183715895
PDWI01271648
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
142
218
+
His
GTG
[ENA]
¢þ
>WENV183717637
PDWJ01001268
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
15975
16051
+
His
GTG
[ENA]
¢þ
>WENV183749501
PPFU01177161
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2061
2137
+
His
GTG
[ENA]
¢þ
>WENV170973317
MTKY01026936
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
350
426
+
His
GTG
[ENA]
¢þ
>C191160520
CP038492
Alphaproteobacteria
Rhodophyticola sp. CCM32 [CP038492]
2137218
2137142
-
His
GTG
-
¡û
>W09102759
AAIG01000012
Alphaproteobacteria
Jannaschia sp. CCS1 [AAIG]
26995
27071
+
His
GTG
[ENA]
¡û
>W1810594705
QGDJ01000004
Alphaproteobacteria
Jannaschia seohaensis DSM 25227 [QGDJ]
33072
33148
+
His
GTG
[ENA]
¡û
>W1810761110
QPLJ01000014
Alphaproteobacteria
Jannaschia formosa 12N15 [QPLJ]
63917
63993
+
His
GTG
[ENA]
¡û
>C151006138
CP004372
Alphaproteobacteria
Roseibacterium elongatum DSM 19469 DFL-43 [CP004372]
1773432
1773508
+
His
GTG
[Ensembl]
¡û
>W1511483026
JWLL01000016
Alphaproteobacteria
Tateyamaria sp. ANG-S1 [JWLL]
55457
55533
+
His
GTG
[ENA]
¡û
>W1610091944
CXPG01000012
Alphaproteobacteria
Jannaschia rubra [CXPG]
92520
92444
-
His
GTG
[ENA]
¡û
>W1610092489
CYPR01000121
Alphaproteobacteria
Jannaschia seosinensis [CYPR]
36065
35989
-
His
GTG
[ENA]
¡û
>W1611013255
LXYJ01000055
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
31378
31302
-
His
GTG
[ENA]
¡û
>W1710095301
CXPG01000012
Alphaproteobacteria
Jannaschia rubra [CXPG]
92520
92444
-
His
GTG
[ENA]
¡û
>W1710095744
CYPR01000121
Alphaproteobacteria
Jannaschia seosinensis [CYPR]
36065
35989
-
His
GTG
[ENA]
¡û
>W1710562123
FOOS01000004
Alphaproteobacteria
Jannaschia rubra [FOOS]
250355
250431
+
His
GTG
[ENA]
¡û
>W1710565155
FORA01000002
Alphaproteobacteria
Jannaschia pohangensis [FORA]
42653
42577
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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