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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154795 (5 seq.)
>WENV180357225
OBNN01000036
[OBNN] marine metagenome; Coastal water
3699
3623
-
Pro
TGG
[ENA]
¢þ
>WENV180377331
OBON01011225
[OBON] marine metagenome; sea water
162
86
-
Pro
TGG
[ENA]
¢þ
>WENV180594161
OCOY01071924
[OCOY] marine metagenome; ENVO:00002010
245
169
-
Pro
TGG
[ENA]
¢þ
>W1610627081
LIDE01000021
Gammaproteobacteria
SAR92 bacterium BACL16 MAG-120619-bin48 [LIDE]
3314
3390
+
Pro
TGG
[ENA]
¡û
>W1710758208
LIDE01000021
Gammaproteobacteria
SAR92 bacterium BACL16 MAG-120619-bin48 [LIDE]
3314
3390
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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