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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155028 (62 seq.)
>WENV180705173
ODEJ01001256
[ODEJ] human metagenome; G_DNA_Tongue dorsum
2760
2836
+
Glu
CTC
[ENA]
¢þ
>WENV180708737
ODFJ01006144
[ODFJ] human metagenome; G_DNA_Tongue dorsum
1245
1321
+
Glu
CTC
[ENA]
¢þ
>WENV180720786
ODGJ01162963
[ODGJ] human metagenome; G_DNA_Tongue dorsum
139
215
+
Glu
CTC
[ENA]
¢þ
>WENV180757125
ODHW01000049
[ODHW] human metagenome; G_DNA_Tongue dorsum
39886
39962
+
Glu
CTC
[ENA]
¢þ
>WENV180763518
ODIA01001409
[ODIA] human metagenome; G_DNA_Tongue dorsum
10987
10911
-
Glu
CTC
[ENA]
¢þ
>WENV180769410
ODIG01065566
[ODIG] human metagenome; G_DNA_Tongue dorsum
367
291
-
Glu
CTC
[ENA]
¢þ
>WENV180776306
ODIK01028627
[ODIK] human metagenome; G_DNA_Tongue dorsum
474
550
+
Glu
CTC
[ENA]
¢þ
>WENV180783899
ODIQ01045406
[ODIQ] human metagenome; G_DNA_Tongue dorsum
193
117
-
Glu
CTC
[ENA]
¢þ
>WENV180789867
ODIT01001303
[ODIT] human metagenome; G_DNA_Tongue dorsum
2308
2232
-
Glu
CTC
[ENA]
¢þ
>WENV180792719
ODIW01001795
[ODIW] human metagenome; G_DNA_Tongue dorsum
6317
6393
+
Glu
CTC
[ENA]
¢þ
>WENV180806575
ODJH01069311
[ODJH] human metagenome; G_DNA_Tongue dorsum
263
187
-
Glu
CTC
[ENA]
¢þ
>WENV180808264
ODJJ01009236
[ODJJ] human metagenome; G_DNA_Buccal mucosa
174
98
-
Glu
CTC
[ENA]
¢þ
>WENV180815869
ODJP01002322
[ODJP] human metagenome; G_DNA_Tongue dorsum
5278
5354
+
Glu
CTC
[ENA]
¢þ
>WENV180820049
ODJR01001507
[ODJR] human metagenome; G_DNA_Tongue dorsum
5826
5902
+
Glu
CTC
[ENA]
¢þ
>WENV180821634
ODJS01028454
[ODJS] human metagenome; G_DNA_Tongue dorsum
591
667
+
Glu
CTC
[ENA]
¢þ
>WENV180830218
ODKB01000919
[ODKB] human metagenome; G_DNA_Tongue dorsum
2545
2621
+
Glu
CTC
[ENA]
¢þ
>WENV180852908
ODKW01010972
[ODKW] human metagenome; G_DNA_Tongue dorsum
1341
1417
+
Glu
CTC
[ENA]
¢þ
>WENV180854675
ODKX01007924
[ODKX] human metagenome; G_DNA_Tongue dorsum
1091
1015
-
Glu
CTC
[ENA]
¢þ
>WENV180856651
ODKZ01042466
[ODKZ] human metagenome; G_DNA_Tongue dorsum
96
172
+
Glu
CTC
[ENA]
¢þ
>WENV180858651
ODLC01018186
[ODLC] human metagenome; G_DNA_Tongue dorsum
789
865
+
Glu
CTC
[ENA]
¢þ
>WENV180861521
ODLE01005250
[ODLE] human metagenome; G_DNA_Tongue dorsum
3502
3578
+
Glu
CTC
[ENA]
¢þ
>WENV180863324
ODLH01000007
[ODLH] human metagenome; G_DNA_Tongue dorsum
74049
73973
-
Glu
CTC
[ENA]
¢þ
>WENV180866597
ODLJ01039525
[ODLJ] human metagenome; G_DNA_Tongue dorsum
79
3
-
Glu
CTC
[ENA]
¢þ
>WENV180877654
ODLV01000877
[ODLV] human metagenome; G_DNA_Tongue dorsum
3600
3524
-
Glu
CTC
[ENA]
¢þ
>WENV180880759
ODLZ01055134
[ODLZ] human metagenome; G_DNA_Tongue dorsum
561
637
+
Glu
CTC
[ENA]
¢þ
>WENV180883199
ODMC01002504
[ODMC] human metagenome; G_DNA_Tongue dorsum
7752
7676
-
Glu
CTC
[ENA]
¢þ
>WENV180883329
ODMC01003781
[ODMC] human metagenome; G_DNA_Tongue dorsum
6473
6549
+
Glu
CTC
[ENA]
¢þ
>WENV180891196
ODMO01086244
[ODMO] human metagenome; G_DNA_Tongue dorsum
64
140
+
Glu
CTC
[ENA]
¢þ
>WENV180896109
ODNI01000100
[ODNI] human metagenome; G_DNA_Tongue dorsum
65002
65078
+
Glu
CTC
[ENA]
¢þ
>WENV180896985
ODNI01004548
[ODNI] human metagenome; G_DNA_Tongue dorsum
3248
3172
-
Glu
CTC
[ENA]
¢þ
>WENV180900646
ODOJ01004682
[ODOJ] human metagenome; G_DNA_Tongue dorsum
2247
2171
-
Glu
CTC
[ENA]
¢þ
>WENV180902080
ODOK01014931
[ODOK] human metagenome; G_DNA_Tongue dorsum
783
859
+
Glu
CTC
[ENA]
¢þ
>WENV180917497
ODTD01036389
[ODTD] human metagenome; G_DNA_Tongue dorsum
429
353
-
Glu
CTC
[ENA]
¢þ
>WENV180919696
ODTH01000045
[ODTH] human metagenome; G_DNA_Tongue dorsum
76620
76544
-
Glu
CTC
[ENA]
¢þ
>WENV180948566
ODUG01002090
[ODUG] human metagenome; G_DNA_Tongue dorsum
12286
12210
-
Glu
CTC
[ENA]
¢þ
>WENV180948713
ODUG01003167
[ODUG] human metagenome; G_DNA_Tongue dorsum
5654
5578
-
Glu
CTC
[ENA]
¢þ
>WENV180959929
ODUM01005609
[ODUM] human metagenome; G_DNA_Tongue dorsum
552
476
-
Glu
CTC
[ENA]
¢þ
>WENV180978237
ODUZ01032552
[ODUZ] human metagenome; G_DNA_Tongue dorsum
621
545
-
Glu
CTC
[ENA]
¢þ
>WENV180985668
ODVJ01011812
[ODVJ] human metagenome; G_DNA_Tongue dorsum
282
206
-
Glu
CTC
[ENA]
¢þ
>WENV180989380
ODVL01145372
[ODVL] human metagenome; G_DNA_Tongue dorsum
250
174
-
Glu
CTC
[ENA]
¢þ
>WENV180990476
ODVN01001549
[ODVN] human metagenome; G_DNA_Tongue dorsum
5784
5708
-
Glu
CTC
[ENA]
¢þ
>WENV181011811
ODWI01144822
[ODWI] human metagenome; G_DNA_Tongue dorsum
86
162
+
Glu
CTC
[ENA]
¢þ
>WENV181014653
ODWN01139020
[ODWN] human metagenome; G_DNA_Tongue dorsum
14
90
+
Glu
CTC
[ENA]
¢þ
>WENV181017067
ODWR01022774
[ODWR] human metagenome; G_DNA_Tongue dorsum
748
672
-
Glu
CTC
[ENA]
¢þ
>WENV181020761
ODWV01000210
[ODWV] human metagenome; G_DNA_Tongue dorsum
5190
5266
+
Glu
CTC
[ENA]
¢þ
>WENV181042103
ODXS01167530
[ODXS] human metagenome; G_DNA_Tongue dorsum
64
140
+
Glu
CTC
[ENA]
¢þ
>WENV181045033
ODXV01114064
[ODXV] human metagenome; G_DNA_Tongue dorsum
174
250
+
Glu
CTC
[ENA]
¢þ
>WENV181052279
ODYE01089183
[ODYE] human metagenome; G_DNA_Tongue dorsum
39
115
+
Glu
CTC
[ENA]
¢þ
>WENV181074287
OEAO01005296
[OEAO] human metagenome; G_DNA_Tongue dorsum
940
1016
+
Glu
CTC
[ENA]
¢þ
>WENV181085561
OEAX01019435
[OEAX] human metagenome; G_DNA_Tongue dorsum
99
23
-
Glu
CTC
[ENA]
¢þ
>WENV181086524
OEAY01001095
[OEAY] human metagenome; G_DNA_Tongue dorsum
9759
9683
-
Glu
CTC
[ENA]
¢þ
>WENV181095660
OEBY01015422
[OEBY] human metagenome; G_DNA_Tongue dorsum
89
13
-
Glu
CTC
[ENA]
¢þ
>WENV181097998
OECA01056482
[OECA] human metagenome; G_DNA_Tongue dorsum
422
496
+
Glu
CTC
[ENA]
¢þ
>WENV181098229
OECA01147430
[OECA] human metagenome; G_DNA_Tongue dorsum
106
182
+
Glu
CTC
[ENA]
¢þ
>WENV181102010
OECT01000637
[OECT] human metagenome; G_DNA_Tongue dorsum
8852
8928
+
Glu
CTC
[ENA]
¢þ
>WENV181103922
OECV01009825
[OECV] human metagenome; G_DNA_Throat
910
986
+
Glu
CTC
[ENA]
¢þ
>WENV181112039
OEEL01000102
[OEEL] human metagenome; G_DNA_Tongue dorsum
4079
4003
-
Glu
CTC
[ENA]
¢þ
>WENV181112572
OEEL01001428
[OEEL] human metagenome; G_DNA_Tongue dorsum
4425
4349
-
Glu
CTC
[ENA]
¢þ
>WENV181139438
OEGN01009198
[OEGN] human metagenome; G_DNA_Tongue dorsum
616
692
+
Glu
CTC
[ENA]
¢þ
>WENV181141836
OEGT01026533
[OEGT] human metagenome; G_DNA_Throat
323
247
-
Glu
CTC
[ENA]
¢þ
>WENV181157780
OEIG01031767
[OEIG] human metagenome; G_DNA_Hard palate
503
579
+
Glu
CTC
[ENA]
¢þ
>WENV181176125
OEJR01000025
[OEJR] human metagenome; G_DNA_Saliva
76620
76544
-
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK