This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155040 (64 seq.)
>W1711097444
LTIR01000094
Bacillota
Lactobacillus sp. HMSC077C11 [LTIR]
50
126
+
Ile
GAT
[ENA]
¡û
>W1711629143
MPOP01000159
Bacillota
Lacticaseibacillus casei [MPOP]
151
227
+
Ile
GAT
[ENA]
¡û
>C171034597
CP014985
Bacillota
Lacticaseibacillus paracasei IIA [CP014985]
2314489
2314565
+
Ile
GAT
-
¡û
>C171034608
CP014985
Bacillota
Lacticaseibacillus paracasei IIA [CP014985]
2975036
2975112
+
Ile
GAT
-
¡û
>C171051627
CP016823
Bacillota
Lacticaseibacillus rhamnosus LRB [CP016823]
2210832
2210756
-
Ile
GAT
-
¡û
>C171051638
CP016823
Bacillota
Lacticaseibacillus rhamnosus LRB [CP016823]
1570982
1570906
-
Ile
GAT
-
¡û
>WENV180008772
FLSB01135429
[FLSB] metagenome; saliva
97
172
+
Ile
GAT
[ENA]
¢þ
>WENV180010191
FLSC01388268
[FLSC] metagenome; saliva
172
96
-
Ile
GAT
[ENA]
¢þ
>WENV180011930
FLSK01097331
[FLSK] metagenome; saliva
77
153
+
Ile
GAT
[ENA]
¢þ
>W141004421
AFYK01000067
Bacillota
Lacticaseibacillus casei 1·î21Æü [AFYK]
359
435
+
Ile
GAT
[ENA]
¡û
>WENV180129479
OATC01013181
[OATC] human gut metagenome; faeces
59
132
+
Ile
GAT
[ENA]
¢þ
>WENV180136776
OATN01002387
[OATN] human gut metagenome; faeces
575
648
+
Ile
GAT
[ENA]
¢þ
>WENV180452934
OBXK01005270
[OBXK] human gut metagenome; faeces
71
144
+
Ile
GAT
[ENA]
¢þ
>WENV180683883
OCVV012849404
[OCVV] gut metagenome; gut
209
285
+
Ile
GAT
[ENA]
¢þ
>WENV180683884
OCVV012849404
[OCVV] gut metagenome; gut
209
285
+
Ile
GAT
[ENA]
¢þ
>WENV180720784
ODGJ01162755
[ODGJ] human metagenome; G_DNA_Tongue dorsum
164
88
-
Ile
GAT
[ENA]
¢þ
>WENV180763877
ODIA01007509
[ODIA] human metagenome; G_DNA_Tongue dorsum
2532
2456
-
Ile
GAT
[ENA]
¢þ
>WENV180769344
ODIG01057857
[ODIG] human metagenome; G_DNA_Tongue dorsum
20
96
+
Ile
GAT
[ENA]
¢þ
>WENV180774217
ODIJ01012728
[ODIJ] human metagenome; G_DNA_Tongue dorsum
2198
2122
-
Ile
GAT
[ENA]
¢þ
>WENV180776371
ODIK01035337
[ODIK] human metagenome; G_DNA_Tongue dorsum
66
142
+
Ile
GAT
[ENA]
¢þ
>WENV180780290
ODIN01106626
[ODIN] human metagenome; G_DNA_Throat
164
88
-
Ile
GAT
[ENA]
¢þ
>WENV180784058
ODIQ01105560
[ODIQ] human metagenome; G_DNA_Tongue dorsum
103
179
+
Ile
GAT
[ENA]
¢þ
>WENV180791222
ODIT01163315
[ODIT] human metagenome; G_DNA_Tongue dorsum
164
88
-
Ile
GAT
[ENA]
¢þ
>WENV180793539
ODIW01030843
[ODIW] human metagenome; G_DNA_Tongue dorsum
645
721
+
Ile
GAT
[ENA]
¢þ
>WENV180807728
ODJI01008240
[ODJI] human metagenome; G_DNA_Tongue dorsum
110
186
+
Ile
GAT
[ENA]
¢þ
>WENV180816884
ODJP01091388
[ODJP] human metagenome; G_DNA_Tongue dorsum
166
90
-
Ile
GAT
[ENA]
¢þ
>WENV180821720
ODJS01040066
[ODJS] human metagenome; G_DNA_Tongue dorsum
208
284
+
Ile
GAT
[ENA]
¢þ
>WENV180861740
ODLE01010571
[ODLE] human metagenome; G_DNA_Tongue dorsum
2220
2144
-
Ile
GAT
[ENA]
¢þ
>WENV180880070
ODLZ01006965
[ODLZ] human metagenome; G_DNA_Tongue dorsum
342
418
+
Ile
GAT
[ENA]
¢þ
>WENV180884394
ODMC01117510
[ODMC] human metagenome; G_DNA_Tongue dorsum
164
88
-
Ile
GAT
[ENA]
¢þ
>WENV180920805
ODTH01024673
[ODTH] human metagenome; G_DNA_Tongue dorsum
546
622
+
Ile
GAT
[ENA]
¢þ
>WENV180922944
ODTJ01021294
[ODTJ] human metagenome; G_DNA_Supragingival plaque
924
1000
+
Ile
GAT
[ENA]
¢þ
>WENV180931852
ODTP01012193
[ODTP] human metagenome; G_DNA_Tongue dorsum
2205
2129
-
Ile
GAT
[ENA]
¢þ
>WENV180950278
ODUG01148428
[ODUG] human metagenome; G_DNA_Tongue dorsum
164
88
-
Ile
GAT
[ENA]
¢þ
>WENV180985992
ODVJ01032169
[ODVJ] human metagenome; G_DNA_Tongue dorsum
139
63
-
Ile
GAT
[ENA]
¢þ
>WENV180991358
ODVN01053669
[ODVN] human metagenome; G_DNA_Tongue dorsum
166
90
-
Ile
GAT
[ENA]
¢þ
>WENV181017108
ODWR01026455
[ODWR] human metagenome; G_DNA_Tongue dorsum
172
248
+
Ile
GAT
[ENA]
¢þ
>WENV181034185
ODXN01106667
[ODXN] human metagenome; G_DNA_Tongue dorsum
164
88
-
Ile
GAT
[ENA]
¢þ
>WENV181039357
ODXQ01018218
[ODXQ] human metagenome; G_DNA_Tongue dorsum
1964
2040
+
Ile
GAT
[ENA]
¢þ
>WENV181058417
ODYL01010725
[ODYL] human metagenome; G_DNA_Tongue dorsum
645
721
+
Ile
GAT
[ENA]
¢þ
>WENV181074576
OEAO01013428
[OEAO] human metagenome; G_DNA_Tongue dorsum
206
282
+
Ile
GAT
[ENA]
¢þ
>WENV181103360
OECT01094332
[OECT] human metagenome; G_DNA_Tongue dorsum
164
88
-
Ile
GAT
[ENA]
¢þ
>WENV181106334
OEED01099537
[OEED] human metagenome; G_DNA_Tongue dorsum
164
88
-
Ile
GAT
[ENA]
¢þ
>WENV181113754
OEEL01096810
[OEEL] human metagenome; G_DNA_Tongue dorsum
164
88
-
Ile
GAT
[ENA]
¢þ
>WENV181151326
OEHW01039029
[OEHW] human metagenome; G_DNA_Tongue dorsum
155
79
-
Ile
GAT
[ENA]
¢þ
>WENV181161155
OEIK01187263
[OEIK] human metagenome; G_DNA_Supragingival plaque
164
88
-
Ile
GAT
[ENA]
¢þ
>WENV181427343
OGCQ01066521
[OGCQ] human gut metagenome; human gut
844
771
-
Ile
GAT
[ENA]
¢þ
>WENV183511942
OMJG01019508
[OMJG] food metagenome; Cotija cheese
834
761
-
Ile
GAT
[ENA]
¢þ
>C191001799
AP018392
Bacillota
Lacticaseibacillus paracasei IJH-SONE68 [AP018392]
2674251
2674178
-
Ile
GAT
-
¡û
>C191001810
AP018392
Bacillota
Lacticaseibacillus paracasei IJH-SONE68 [AP018392]
1992091
1992018
-
Ile
GAT
-
¡û
>C191034464
CP025428
Bacillota
Lacticaseibacillus rhamnosus LR-B1 [CP025428]
2566121
2566048
-
Ile
GAT
-
¡û
>C191034475
CP025428
Bacillota
Lacticaseibacillus rhamnosus LR-B1 [CP025428]
1926176
1926103
-
Ile
GAT
-
¡û
>W1810472594
QAGX01000017
Bacillota
Lacticaseibacillus rhamnosus DS22_11 [QAGX]
460
387
-
Ile
GAT
[ENA]
¡û
>W1810473954
QAHU01000108
Bacillota
Lactobacillus sp. DS2_6 [QAHU]
343
270
-
Ile
GAT
[ENA]
¡û
>W1810488469
QAZJ01000036
Bacillota
Lacticaseibacillus rhamnosus DS3_11 [QAZJ]
681
608
-
Ile
GAT
[ENA]
¡û
>C10108988
FM179323
Bacillota
Lacticaseibacillus rhamnosus Lc 705 [FM179323]
2548265
2548189
-
Ile
GAT
[Ensembl]
¡û
>C10109000
FM179323
Bacillota
Lacticaseibacillus rhamnosus Lc 705 [FM179323]
1895597
1895521
-
Ile
GAT
[Ensembl]
¡û
>W1511439949
JUON01000094
Bacillota
Lacticaseibacillus rhamnosus 906_LRHA [JUON]
76
152
+
Ile
GAT
[ENA]
¡û
>W1511441738
JUQW01000199
Bacillota
Lacticaseibacillus paracasei 844_LCAS [JUQW]
3217
3141
-
Ile
GAT
[ENA]
¡û
>W1610543454
JTHU01000001
Bacillota
Lacticaseibacillus rhamnosus [JTHU]
14
90
+
Ile
GAT
[ENA]
¡û
>W1610544260
JTIJ01000055
Bacillota
Lacticaseibacillus rhamnosus [JTIJ]
333
257
-
Ile
GAT
[ENA]
¡û
>WENV086550
BABG01000027
Gut microbiome of Human (healthy human sample In-R, Adult, Female)
3928
3852
-
Ile
GAT
[ENA]
>W1710646585
JTHU01000001
Bacillota
Lacticaseibacillus rhamnosus [JTHU]
14
90
+
Ile
GAT
[ENA]
¡û
>W1710647391
JTIJ01000055
Bacillota
Lacticaseibacillus rhamnosus [JTIJ]
333
257
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK